LOC120549540 (LOC104958255)


Basic Information

Item Value
gene id LOC120549540
gene name LOC104958255
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 7072100 ~ 7092651 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039786539.1
AAGCACCTCTTCTCATTAGTTGTTTTACAGCGTGCCAGCTCTTCCACAGAGTGGACTGGAACCAGGGTGCAGTATCTGGAACATActtttatatatactttttcttttctcttgcaGGCTACACTTTaaaggaagaagaagatttCAACCAGGATTTTTTAGGAACAGATTTTTTAGGAACAGATTTTCTCCAGCGTGGGTTACATCCTCCGTTCCGCTGCCCTGATATGAGTCCGTCTCCCACCGTCCCAACCTCAGTGGAATATGTCAGAGCTGCAGATGTCAAAGTCATCGCTGCACTGGGAGACTCTTTAACTCATTGGAGGATATGGAACTTATCAAAATGTCATCACACTGGCAAaaACATCTCAGATCAGATCAGAAACATGATAGACACATTCAAGTCTTATCCAGGTCTGAACTTCGAAGAGGACTGGAAGGTGGTGACAATGCTGATTGGCATGAACGACATTTGCGATTACTGCAAAGACAAAACTCTGTTCTCCCCTGACAGCTTCATTCACTACATGACAGAAGCTCTGGACATGATGATGAAGGAGATCCCCAGGACAATGGTGAACGTGGTGCAGATTCTTCCCATGAGACCTCTCAGAGAAGTTCAGAGACCGACTCCAGGCTGTCAGCTTCAAAAGAGGTTCTGCTCGTGCCTCGTCCAGCCGGAAGAAAACTCCACCGAGctgaaggagctggttgagatTAACGCTCAGTTCCAGAGGAGACTAGAGAGGCTTCTGCACGGTGAGCGTTTCTTCAAAAAGGACTTTGCTGTTGTTCTGCAACCTTATTTAGAGAATGCAGGTGCTCCAAGACTTCCTGACGGGACGATTGACTTGAGCTTCTTCACAGCAGATTGTTTCCACTTCACTGTTAAGGGACATGAGGAGCTGGCAAAGGGACTGTGGAACAAtgTTCCAGCCTGTCGGAGGGAAAGAAacaataaagacattttcagaGCCAATACAACTCATCTGCCCAGCAAAGGAGCATCCTTACATCTACACCAGGCCCCGAGTTGAGTCGTCTGCACCAACGCTGAACCATTTCTCCATGACGCTCATGTCTCTGCTCttaatgtatttaatttaattatgtgTAGTTTAACAGGCAGAGCAAGGCACTAACACTGCCTGGATAGACTGGAACCACCGCTCCTAAAAACATAGACTCGGGAAACTCattttaactaacaatgtaataTCCCCATGAAACTcccccagttgattacttacattaggACAATTCTtttttgcattacaagttttctcaaattttatgcaaa
>XM_039786541.1
AGATTTTCTCCAGCGTGGGTTACATCCTCCGTTCCGCTGCCCTGATATGAGTCCGTCTCCCACCGTCCCAACCTCAGTGGAATATGTCAGAGCTGCAGATGTCAAAGTCATCGCTGCACTGGGAGACTCTTTAACTACAGCTATCGGGGCCATTGGTTCTACGATCTTATCAATACCTTTTGAATTTCGCCAAGTGTCTTGGAGCATTGGAGGATATGGAACTTATCAAAATGTCATCACACTGGCAAGTAAGTTAGTTTATAGCAAGAAGATTAGCAGGAATAATCTCATTACAATTTGTAAAGCCAAAAGAACTCAGCTATCTGGGTCAGCAAGTTAGATTAGCCCGGCCTAGGATAGTTAGATAACTAtctaatgaatgaatgaatatccattttttttttttaaatgatgcaaCATCTGTGATTCTTTGGCTGAGATTGAGATTGTTTCTGACTCCAAGAAGatgtttgcaaaactaaaactaaaggcCCATTATTCCAGGATGACTTGGCTTGTTGTGCCATAACAATCAGTGtctttatgaaaaaaagaaaatggtttgGTAAATGTTGGAGGTATCAGTTGAGGAAATCACATCTCGTGTGGTCCAGATATTTTCAAACTCTTCAATCCCAAACTGCTGGGTCCATCCCCGGTGAGGACCTTCCACGGTCAGCCAGCCACGGTCAACGAGACCGGCTTCAACTTCGCCGTCACCAGCCACAACACGCTGAAAGACTCCGCtggacactcacacacaacagCTTAGATTATTCTCGGACTCAATTTGaaACATCTCAGATCAGATCAGAAACATGATAGACACATTCAAGTCTTATCCAGGTCTGAACTTCGAAGAGGACTGGAAGGTGGTGACAATGCTGATTGGCATGAACGACATTTGCGATTACTGCAAAGACAAAACTCTGTTCTCCCCTGACAGCTTCATTCACTACATGACAGAAGCTCTGGACATGATGATGAAGGAGATCCCCAGGACAATGGTGAACGTGGTGCAGATTCTTCCCATGAGACCTCTCAGAGAAGTTCAGAGACCGACTCCAGGCTGTCAGCTTCAAAAGAGGTTCTGCTCGTGCCTCGTCCAGCCGGAAGAAAACTCCACCGAGctgaaggagctggttgagatTAACGCTCAGTTCCAGAGGAGACTAGAGAGGCTTCTGCACGGTGAGCGTTTCTTCAAAAAGGACTTTGCTGTTGTTCTGCAACCTTATTTAGAGAATGCAGGTGCTCCAAGACTTCCTGACGGGACGATTGACTTGAGCTTCTTCACAGCAGATTGTTTCCACTTCACTGTTAAGGGACATGAGGAGCTGGCAAAGGGACTGTGGAACAAtgTTCCAGCCTGTCGGAGGGAAAGAAacaataaagacattttcagaGCCAATACAACTCATCTGCCCAGCAAAGGAGCATCCTTACATCTACACCAGGCCCCGAGTTGAGTCGTCTGCACCAACGCTGAACCATTTCTCCATGACGCTCATGTCTCTGCTCttaatgtatttaatttaattatgtgTAGTTTAACAGGCAGAGCAAGGCACTAACACTGCCTGGATAGACTGGAACCACCGCTCCTAAAAACATAGACTCGGGAAACTCattttaactaacaatgtaataTCCCCATGAAACTcccccagttgattacttacattaggACAATTCTtttttgcattacaagttttctcaaattttatgcaaa
>XM_039786542.1
AGATTTTCTCCAGCGTGGGTTACATCCTCCGTTCCGCTGCCCTGATATGAGTCCGTCTCCCACCGTCCCAACCTCAGTGGAATATGTCAGAGCTGCAGATGTCAAAGTCATCGCTGCACTGGGAGACTCTTTAACTACAGCTATCGGGGCCATTGGTTCTACGATCTTATCAATACCTTTTGAATTTCGCCAAGTGTCTTGGAGCATTGGAGGATATGGAACTTATCAAAATGTCATCACACTGGCAAATATTTTCAAACTCTTCAATCCCAAACTGCTGGGTCCATCCCCGGTGAGGACCTTCCACGGTCAGCCAGCCACGGTCAACGAGACCGGCTTCAACTTCGCCGTCACCAGCCACAACACGCTGAAAGACTCCGCtggacactcacacacaacagCTTAGATTATTCTCGGACTCAATTTGaaACATCTCAGATCAGATCAGAAACATGATAGACACATTCAAGTCTTATCCAGGTCTGAACTTCGAAGAGGACTGGAAGGTGGTGACAATGCTGATTGGCATGAACGACATTTGCGATTACTGCAAAGACAAAACTCTGTTCTCCCCTGACAGCTTCATTCACTACATGACAGAAGCTCTGGACATGATGATGAAGGAGATCCCCAGGACAATGGTGAACGTGGTGCAGATTCTTCCCATGAGACCTCTCAGAGAAGTTCAGAGACCGACTCCAGGCTGTCAGCTTCAAAAGAGGTTCTGCTCGTGCCTCGTCCAGCCGGAAGAAAACTCCACCGAGctgaaggagctggttgagatTAACGCTCAGTTCCAGAGGAGACTAGAGAGGCTTCTGCACGGTGAGCGTTTCTTCAAAAAGGACTTTGCTGTTGTTCTGCAACCTTATTTAGAGAATGCAGGTGCTCCAAGACTTCCTGACGGGACGATTGACTTGAGCTTCTTCACAGCAGATTGTTTCCACTTCACTGTTAAGGGACATGAGGAGCTGGCAAAGGGACTGTGGAACAAtgTTCCAGCCTGTCGGAGGGAAAGAAacaataaagacattttcagaGCCAATACAACTCATCTGCCCAGCAAAGGAGCATCCTTACATCTACACCAGGCCCCGAGTTGAGTCGTCTGCACCAACGCTGAACCATTTCTCCATGACGCTCATGTCTCTGCTCttaatgtatttaatttaattatgtgTAGTTTAACAGGCAGAGCAAGGCACTAACACTGCCTGGATAGACTGGAACCACCGCTCCTAAAAACATAGACTCGGGAAACTCattttaactaacaatgtaataTCCCCATGAAACTcccccagttgattacttacattaggACAATTCTtttttgcattacaagttttctcaaattttatgcaaa
>XM_039786543.1
AGATTTTCTCCAGCGTGGGTTACATCCTCCGTTCCGCTGCCCTGATATGAGTCCGTCTCCCACCGTCCCAACCTCAGTGGAATATGTCAGAGCTGCAGATGTCAAAGTCATCGCTGCACTGGGAGACTCTTTAACTACAGCTATCGGGGCCATTGGTTCTACGATCTTATCAATACCTTTTGAATTTCGCCAAGTGTCTTGGAGCATTGGAGGATATGGAACTTATCAAAATGTCATCACACTGGCAAaaACATCTCAGATCAGATCAGAAACATGATAGACACATTCAAGTCTTATCCAGGTCTGAACTTCGAAGAGGACTGGAAGGTGGTGACAATGCTGATTGGCATGAACGACATTTGCGATTACTGCAAAGACAAAACTCTGTTCTCCCCTGACAGCTTCATTCACTACATGACAGAAGCTCTGGACATGATGATGAAGGAGATCCCCAGGACAATGGTGAACGTGGTGCAGATTCTTCCCATGAGACCTCTCAGAGAAGTTCAGAGACCGACTCCAGGCTGTCAGCTTCAAAAGAGGTTCTGCTCGTGCCTCGTCCAGCCGGAAGAAAACTCCACCGAGctgaaggagctggttgagatTAACGCTCAGTTCCAGAGGAGACTAGAGAGGCTTCTGCACGGTGAGCGTTTCTTCAAAAAGGACTTTGCTGTTGTTCTGCAACCTTATTTAGAGAATGCAGGTGCTCCAAGACTTCCTGACGGGACGATTGACTTGAGCTTCTTCACAGCAGATTGTTTCCACTTCACTGTTAAGGGACATGAGGAGCTGGCAAAGGGACTGTGGAACAAtgTTCCAGCCTGTCGGAGGGAAAGAAacaataaagacattttcagaGCCAATACAACTCATCTGCCCAGCAAAGGAGCATCCTTACATCTACACCAGGCCCCGAGTTGAGTCGTCTGCACCAACGCTGAACCATTTCTCCATGACGCTCATGTCTCTGCTCttaatgtatttaatttaattatgtgTAGTTTAACAGGCAGAGCAAGGCACTAACACTGCCTGGATAGACTGGAACCACCGCTCCTAAAAACATAGACTCGGGAAACTCattttaactaacaatgtaataTCCCCATGAAACTcccccagttgattacttacattaggACAATTCTtttttgcattacaagttttctcaaattttatgcaaa
>XM_039786544.1
CAGAGCTGCAGATGTCAAAGTCATCGCTGCACTGGGAGACTCTTTAACTCATTGGAGGATATGGAACTTATCAAAATGTCATCACACTGGCAAATATTTTCAAACTCTTCAATCCCAAACTGCTGGGTCCATCCCCGGTGAGGACCTTCCACGGTCAGCCAGCCACGGTCAACGAGACCGGCTTCAACTTCGCCGTCACCAGCCACAACACGCTGAAAGACTCCGCtggacactcacacacaacagCTTAGATTATTCTCGGACTCAATTTGaaACATCTCAGATCAGATCAGAAACATGATAGACACATTCAAGTCTTATCCAGGTCTGAACTTCGAAGAGGACTGGAAGGTGGTGACAATGCTGATTGGCATGAACGACATTTGCGATTACTGCAAAGACAAAACTCTGTTCTCCCCTGACAGCTTCATTCACTACATGACAGAAGCTCTGGACATGATGATGAAGGAGATCCCCAGGACAATGGTGAACGTGGTGCAGATTCTTCCCATGAGACCTCTCAGAGAAGTTCAGAGACCGACTCCAGGCTGTCAGCTTCAAAAGAGGTTCTGCTCGTGCCTCGTCCAGCCGGAAGAAAACTCCACCGAGctgaaggagctggttgagatTAACGCTCAGTTCCAGAGGAGACTAGAGAGGCTTCTGCACGGTGAGCGTTTCTTCAAAAAGGACTTTGCTGTTGTTCTGCAACCTTATTTAGAGAATGCAGGTGCTCCAAGACTTCCTGACGGGACGATTGACTTGAGCTTCTTCACAGCAGATTGTTTCCACTTCACTGTTAAGGGACATGAGGAGCTGGCAAAGGGACTGTGGAACAAtgTTCCAGCCTGTCGGAGGGAAAGAAacaataaagacattttcagaGCCAATACAACTCATCTGCCCAGCAAAGGAGCATCCTTACATCTACACCAGGCCCCGAGTTGAGTCGTCTGCACCAACGCTGAACCATTTCTCCATGACGCTCATGTCTCTGCTCttaatgtatttaatttaattatgtgTAGTTTAACAGGCAGAGCAAGGCACTAACACTGCCTGGATAGACTGGAACCACCGCTCCTAAAAACATAGACTCGGGAAACTCattttaactaacaatgtaataTCCCCATGAAACTcccccagttgattacttacattaggACAATTCTtttttgcattacaagttttctcaaattttatgcaaa

Function

NR:

description
PREDICTED: phospholipase B1, membrane-associated-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039786539.1 False 1300 mRNA 0.45 13 7072100 7092651
XM_039786541.1 True 1732 mRNA 0.44 13 7073001 7092651
XM_039786542.1 False 1366 mRNA 0.47 14 7073001 7092651
XM_039786543.1 False 1187 mRNA 0.46 13 7073001 7092651
XM_039786544.1 False 1211 mRNA 0.46 12 7073349 7092651

Neighbor

gene id symbol gene type direction distance location
LOC120549537 ahsa1,LOC103354751 coding upstream 6315 7058378 ~ 7065785 (+)
LOC120550044 NA coding upstream 177678 6894216 ~ 6894422 (+)
LOC120550052 NA coding upstream 183183 6888711 ~ 6888917 (+)
LOC120550047 NA coding upstream 184544 6887350 ~ 6887556 (+)
LOC120550053 NA coding upstream 187339 6884554 ~ 6884761 (+)
larp1b LOC103354752 coding downstream 5789 7098440 ~ 7139983 (+)
pgrmc2 pgrmc2 coding downstream 48631 7141282 ~ 7153826 (+)
asmt2 asmt,LOC103354763,LOC100692897,LOC102199344,LOC102295279,LOC101473716 coding downstream 66837 7159488 ~ 7171856 (+)
jade1 NA coding downstream 80372 7173023 ~ 7189067 (+)
letm1 letm1,LOC104955635 coding downstream 127665 7220316 ~ 7251134 (+)
G200613 NA non-coding upstream 34356 7036433 ~ 7037744 (+)
G200611 NA non-coding upstream 40171 7031721 ~ 7031929 (+)
G200610 NA non-coding upstream 44604 7027225 ~ 7027496 (+)
LOC120549536 NA non-coding upstream 54443 6988005 ~ 7017657 (+)
G200602 NA non-coding upstream 84869 6973105 ~ 6987231 (+)
G200615 NA non-coding downstream 4285 7096936 ~ 7171856 (+)
G200626 NA non-coding downstream 35524 7128175 ~ 7129122 (+)
G200618 NA non-coding downstream 99920 7192571 ~ 7194634 (+)
G200704 NA non-coding downstream 168746 7261397 ~ 7261785 (+)
G200717 NA non-coding downstream 245695 7338346 ~ 7344002 (+)
LOC120550068 NA other upstream 171756 6900139 ~ 6900344 (+)
LOC120549783 NA other upstream 303438 6758637 ~ 6768662 (+)
vps29 eif5,vps29,LOC107595689 other upstream 324698 6732248 ~ 6747402 (+)
G200492 NA other upstream 389509 6677658 ~ 6682591 (+)
G200452 NA other upstream 500343 6568276 ~ 6571757 (+)
G201057 dcaf10,LOC102795877 other downstream 2127990 9220641 ~ 9221302 (+)
psen1 psen1,LOC100697238 other downstream 2498519 9591170 ~ 9604625 (+)
G201287 NA other downstream 2616213 9708864 ~ 9817625 (+)
smoc1 smoc1 other downstream 2843085 9935736 ~ 10007687 (+)
LOC120549492 NA other downstream 2949374 10042025 ~ 10044094 (+)

Expression


Co-expression Network