G215494


Basic Information

Item Value
gene id G215494
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22754560 ~ 22755107 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU255292
cttttttaattttttgctgttttttttttcttccaaatacAAACATGGCAAAAATGAGGTAACTGTAAATGTGCAAGTaccaaagcaaaaaacaaacaacaacaaaaacttcctaacacagaacaggtgtggCCCTGTTGTTGGCCCCGGGGTGGTGTAGATGTGGGTGTGTGGTGGGGTGTTGTGGGGCTCCGGAGTGGACGCGGCGCCCCCTACAGCCCAGGGCGAGTATTAGAACAGTAAACAATCAACGAGCCCacagcaagaaaagaaaaaaaaaaattattggtaAACAATCAGTGGCATCTACGGAGCAATCAACAAATCACAAGTCCTAAAGAATCGGAGCTGCTTATTGGAACACAACTGCACCACACAAGCTGTgagattatttattaatcagaTCACAGAAAGACTACAAGATTctatgtatttgtatgtgtattttttttttttcagtacaggtAACACTGAGGTTCAAGGAATCAGATTATTGTGAAAATTTGCTTATAAATCTAAATAAGagtacagtataaacagctgTCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255292 True 548 lncRNA 0.39 1 22754560 22755107

Neighbor

gene id symbol gene type direction distance location
cdhr2 NA coding downstream 24707 22706554 ~ 22729853 (-)
LOC113546904 LOC108258503 coding downstream 57737 22678164 ~ 22696823 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding downstream 77812 22661560 ~ 22676748 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding downstream 110297 22629881 ~ 22644263 (-)
topaz1 topaz1 coding downstream 172458 22552724 ~ 22582102 (-)
faf2 faf2,LOC107594931 coding upstream 874 22755981 ~ 22763871 (-)
unc5a unc5a,LOC107677380 coding upstream 71837 22826944 ~ 23035173 (-)
dok3 dok3 coding upstream 530601 23285708 ~ 23297814 (-)
LOC113546952 ddx41,LOC107749764,LOC107750345 coding upstream 542842 23297949 ~ 23309411 (-)
abhd18 abhd18,LOC104944271 coding upstream 574662 23329769 ~ 23338185 (-)
G215509 NA non-coding downstream 17081 22737276 ~ 22737479 (-)
G215507 NA non-coding downstream 20465 22733729 ~ 22734095 (-)
G215262 NA non-coding downstream 210580 22446122 ~ 22543980 (-)
G215269 NA non-coding downstream 246697 22475021 ~ 22507863 (-)
LOC117598972 NA non-coding downstream 273638 22477976 ~ 22480922 (-)
G215489 NA non-coding upstream 26216 22781323 ~ 22815252 (-)
G215493 NA non-coding upstream 33109 22788216 ~ 22797514 (-)
G215491 NA non-coding upstream 67613 22822720 ~ 22826241 (-)
G215568 NA non-coding upstream 206833 22961940 ~ 22962156 (-)
G215589 NA non-coding upstream 244114 22999221 ~ 22999466 (-)
smim13 smim13,LOC107559689,LOC107669968,LOC107551766,LOC107734024 other downstream 50077 22656542 ~ 22704483 (-)
LOC117598969 NA other downstream 334650 22399685 ~ 22419910 (-)
LOC117598814 NA other downstream 390295 22326726 ~ 22364265 (-)
LOC117598975 NA other downstream 432827 22321174 ~ 22321733 (-)
LOC117598862 NA other downstream 434285 22319544 ~ 22320275 (-)
cltb cltb,LOC107750349,LOC107677378 other upstream 14530 22769637 ~ 22779068 (-)
G215624 LOC108277208 other upstream 379812 23134919 ~ 23156666 (-)
fam193b fam193b,LOC107579325 other upstream 557779 23312886 ~ 23327942 (-)
LOC113546965 dgkq,LOC107595737,LOC107749781,LOC107587098 other upstream 601046 23356153 ~ 23389259 (-)
usp7 usp7 other upstream 1785665 24540772 ~ 24588450 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G105066 NA non-coding NC_053121.1 CM020918.1 15086584 ~ 15090581 (+)
bowfin (Amia calva) G106874 NA non-coding CM030133.1 CM030133.1 24986838 ~ 24991237 (+)