G183809


Basic Information

Item Value
gene id G183809
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17879205 ~ 17879409 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU217579
GGAGTAATGAAATTGGACGTAAACATTAGAGGTACACTGCCATCTACAGGAAAAAGTTCAAGAGGTTGGTACCCAAATAAGGGATTGAAACTGTCACTAAAATGCATTGTCTAGTGCACCCTTCATGCATGCAGCAGATTTTTAATTCCCTACAGGTCTTGGTAGAAATCTACATCGTTTTCATTTGGGCCTAGCAGCATGCAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU217579 True 205 lncRNA 0.40 1 17879205 17879409

Neighbor

gene id symbol gene type direction distance location
LOC113527193 NA coding downstream 28046 17798680 ~ 17851159 (-)
b3gnt5a b3g5a,LOC108439423 coding downstream 160574 17714317 ~ 17718631 (-)
ncbp2 ncbp2 coding downstream 230497 17645388 ~ 17648708 (-)
si:ch211-262h13.5 LOC108271434 coding downstream 284202 17585118 ~ 17595003 (-)
ahsg1 NA coding downstream 294858 17581606 ~ 17584347 (-)
tbl1xr1a tbl1xr1,tbl1xr1a,LOC107600277,LOC107718892,LOC106584305,LOC107557783 coding upstream 675046 18554455 ~ 18615864 (-)
zmat3 zmat3,LOC107581711 coding upstream 869982 18749391 ~ 18764170 (-)
LOC117598436 NA coding upstream 918595 18798004 ~ 18799016 (-)
spata1 NA coding upstream 973176 18852585 ~ 18857563 (-)
rpf1 rpf1,LOC107669022 coding upstream 979915 18859324 ~ 18867257 (-)
G183558 NA non-coding downstream 13459 17865507 ~ 17865746 (-)
G183408 NA non-coding downstream 331725 17546459 ~ 17547480 (-)
LOC117598411 wwtr1 non-coding downstream 423597 17454062 ~ 17455608 (-)
G183400 NA non-coding downstream 425742 17453218 ~ 17453463 (-)
G183399 NA non-coding downstream 426096 17452870 ~ 17453109 (-)
G183826 NA non-coding upstream 18737 17898146 ~ 17898353 (-)
LOC113530379 NA non-coding upstream 1060693 18940102 ~ 18948626 (-)
G184255 NA non-coding upstream 1079840 18959249 ~ 18960854 (-)
LOC113526295 NA non-coding upstream 1154885 19034294 ~ 19050477 (-)
G184439 NA non-coding upstream 1341416 19220825 ~ 19271310 (-)
traf5 LOC108271110,LOC108411952 other downstream 526836 17342815 ~ 17352369 (-)
zgc:172076 LOC108271265,LOC108411951 other downstream 536951 17245772 ~ 17342254 (-)
micos13 c10h19orf70,cunh19orf70 other downstream 1600348 16274882 ~ 16278857 (-)
G182210 NA other downstream 2186855 15690774 ~ 15692350 (-)
lama3 LOC108270685 other downstream 3299458 14550906 ~ 14579747 (-)
trnav-uac_6 NA other upstream 1436710 19316119 ~ 19316374 (-)
G184716 rps15,LOC107685215,LOC107578086 other upstream 1815853 19695262 ~ 19697709 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other upstream 1826673 19706082 ~ 19712597 (-)
elavl1b LOC108270814,LOC108437281,LOC103034406,LOC105889513 other upstream 2303633 20183042 ~ 20192143 (-)
mob3c mob3c,LOC108270829,LOC103027889,LOC108438648,LOC106613547,LOC106574029,LOC107572948 other upstream 3043886 20923295 ~ 20929955 (-)

Expression


Co-expression Network