LOC117596602


Basic Information

Item Value
gene id LOC117596602
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 7208315 ~ 7209085 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577661.1
CAACATTTCGTGAACTACTACTAACTCtaactcttttttctctttcaggtctGCTCTAGGGATCTCCATCTGGCTACCGCCACCCACTGGACACCCATTGCCTAGCTTGTGTTTGCAGCAGACATCATTGTGCACTATGATCTTCTACCACCATCACTGTTCATCAACAGGAATCTGTACTTTCACTGAAGGAATCTAACCTTGAACCATTGAAACAATCTACTTTCTTACCCATCTACAATGCTAGGCTGACCTAAGGTATGGt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577661.1 True 265 lncRNA 0.43 3 7208315 7209085

Neighbor

gene id symbol gene type direction distance location
LOC117596544 LOC108261522,LOC108256778 coding upstream 622823 6494417 ~ 6585492 (+)
LOC117596543 LOC108256778 coding upstream 824091 6380073 ~ 6384224 (+)
LOC117596580 NA coding upstream 839532 6363164 ~ 6368783 (+)
ivns1abpa ivns1abp,ivns1abpa,LOC108256770,LOC107732388,LOC107553504,LOC107726450 coding upstream 1159793 6034549 ~ 6048522 (+)
arpc5b arpc5,arpc5b,LOC103045524,LOC107698380,LOC107599090,LOC107732423,LOC104921830 coding upstream 1298420 5903579 ~ 5909895 (+)
LOC113529075 LOC108275256,LOC108427497,LOC100690439 coding downstream 223403 7432488 ~ 7497053 (+)
nrl LOC108275247,LOC108427498 coding downstream 311363 7520448 ~ 7525893 (+)
LOC113528764 LOC108427476,LOC103026240,LOC108274573 coding downstream 321142 7530227 ~ 7546810 (+)
senp6a senp6 coding downstream 370180 7579265 ~ 7607340 (+)
myo6a myo6 coding downstream 402770 7611855 ~ 7726643 (+)
G409021 NA non-coding upstream 241 7099297 ~ 7208074 (+)
LOC117596588 NA non-coding upstream 55758 7152037 ~ 7152557 (+)
LOC117596595 NA non-coding upstream 78335 7129305 ~ 7129980 (+)
LOC117596599 NA non-coding upstream 88331 7117232 ~ 7119984 (+)
LOC117596598 LOC106674878,LOC106676183,LOC102302549 non-coding upstream 116887 7086830 ~ 7091428 (+)
LOC117596585 NA non-coding downstream 53716 7262801 ~ 7268416 (+)
G409280 NA non-coding downstream 128252 7337337 ~ 7340017 (+)
G409390 NA non-coding downstream 321840 7530925 ~ 7531296 (+)
G409602 NA non-coding downstream 669805 7878890 ~ 7879101 (+)
G409603 NA non-coding downstream 673082 7882167 ~ 7882388 (+)
LOC117596594 NA other upstream 137282 6764911 ~ 7071033 (+)
LOC117596573 LOC108280157 other upstream 468788 6613273 ~ 6739527 (+)
LOC117596581 NA other upstream 554297 6633365 ~ 6654018 (+)
G408929 NA other upstream 565817 6556363 ~ 6642498 (+)
LOC117596579 NA other upstream 770552 6394856 ~ 6437763 (+)
G409600 NA other downstream 668710 7877795 ~ 7878545 (+)
LOC113529148 NA other downstream 1889292 9098377 ~ 9104224 (+)
G410936 snx3 other downstream 2968964 10178049 ~ 10182672 (+)
afg1lb lace1 other downstream 2988631 10197716 ~ 10230807 (+)
armc2 armc2 other downstream 3026896 10235981 ~ 10295205 (+)

Expression


Co-expression Network