AMCG00009387


Basic Information

Item Value
gene id AMCG00009387
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 36704289 ~ 36731243 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009387
TTTGGATTGCTGCTGCAGGATCCGGcgtagtgaaaaataaaaaataaacataactcTGATAATCGCAACAAAATGCGATTGTACAGTTGTTTAACACATATAGTTAATGGTAAAAATTAAACCACCGAGACCTCAGTAGTTGTTATCACTCGGTTCCATTGTCATCGTGATCCAGAACCGTACAGGCGTGTTGCTTTGTTAACTGTACCTCCTAAGCGAATTGCAATAGGTTGCTTGAAAAGTTCTGATGCGggaataatacagtaatatcaATATAACCGTGATATTACTCATTAAAACGCGGTATTTATAAGATACCCGTATTTGATCGTTTTACAATAGAAGATTGGGTGCTTCCACGAGTTCCAGATATGAGTTATGGATATGGGGGTAGAAGAGGCCGGCGAGGGGGTCGCGGATTCGGGGAGAGCAGCGACGAGCGCTGGGATCGAGGGGCCGGTTCGAGTGGAGGAGGATACCAGAAACCCTCCAGCTGGGACCCCAGGGAGGATGACGGGGGAGCCCGTGGCCGGCATCCAGGCCACCTGAAGGGCAGGGAGATCGGTCTGTGGTACGCCAAGAGAGGAGGGATGAAAAGGAAAGATCAGGAGAGAAAGTCGAGAGCTGTTGTACAGATGGATGAATCCCGGGAGCAGCACATCACACAGCTCCTGAGCTCTGTGCAGACTGCCACACCCCAGAGGGACCCCCCTCCTTCAACATCACAAGCCCCCCAGGCTTACAGAGACAGCCAGAGaTATTTCGGTTCTGATAGTTTTTCGCAAAAGGATACAAAAGACATAAATGATCGAGACTTGGAATACTTGTTCCAGGATATTGTTCGAGATGCTAGTCTTGACcaagaaatcaaaagagaccTTCAGAAGAAAAGGTCTGATCCTAAATTCTTGGAAATGTTGaAATTCAGAGAGAAACTTCCTTCATATGGAATGAGAAGGGAGCTGGTTGATTTAATAAGAAAGAAtcaggtggtggtggtgagtGGAGAGACCGGCTGTGGTAAAACCACCCAGGTCCCTCAGTTCATCCTGGATGACTATATCGAGAGGGAGATGGGCTCTCTGTGCCGGGTGGTCTGCACTCAGCCCCGCAGGATCAGTGCCATTTCTGTAGCAGAAAGAGTGGCCGTAGAGAGAGCAGAAAGCTGTGGAGATGGAAATTCCTCTGGGTATCAGATCAGATTGCAGTGCCAGTTACCAAGGAAACAAGGCTCTATCTTGTATTGTACAACAGGCATCATTTTGCAATGGCTCCGGTCAGATCCGCACTTGTCAAACATCAGTCACATAGTCCTGGATGAAATTCACGAGAGGAACCTGCAGTCCGATGTGCTGCTCACAATAGTGAAAGATCTGCTCACGTTCCGAGATGACTTGAAAGTCATCCTAATGAGTGCCACCTTAAATGCAGAgaagttttcaaaatattttgTGAAGGAGTACCTGTTGGAAGATATAGTGGAAATGCTAAGGTACCGTCCCCAGAATCAAGATCGCAGACCGGCCTGGAAGAAGAGGTTCATGCAGGGGCAGATGTCCCGGCCAGAGAAGGAGGAACGAGAGGAGGAGTATAAGGAGAGCTGGCCTTGCTATGCCAGGAAACTGCGAGACAGGTTCTCGGATAACACCATCGAGGTCTTGGAAATGTTGGATGAAGATGATAAAATCGACCTATCCCTGATTGTAGAATTGATCAGGTACATTGTACTGAATGGAGAGgaTGGTGCTATTCTCGTGTTCTTGCCTGGCTGGGACAATATCAGTGGATTAAATGATCTTCTGATGGCTCAGCAAATGTTTAAGTCAGACAAATTCATCATCATTCCCCTCCACTCTCTGATGCCGACTGTGAACCAGACTCAGGTTTTTAAGAGGCCTCCTCTAGGTGTGCGAAAGATTGTCATTGCCACTAACATTGCTGAGACCAGTATCACCATCGATGATATTGTTCATGTTATAGATGGAGGGAAAATAAAGGAGACTAACTTTGACATTCAGAACAACATCAGCACCCTGACTGCAGAGTGGGTCAGCCTGGCGAATGCCAAACAGAGGAAGGGTCGTGCCGGGAGGGTTCAGCCTGGAAAATGTTACCATCTGTATAATGCTCTGAGAAACAGCCTCCTGGATGACTATCAGTTGCCCGAGATCATGAGGACTCCCCTGGAGGAGCTGTGTCTGCAGATCAAGATATTGAAGCTGGGAAGAATTGCATCATTCCTTCGTAAAGCGCTGGACCCCCCCTCAGAATCAGCTGTACAACTAGCAGTAACCCACTTGATTGAACTGAATGCCTTGGATAAAAACGAGGAATTGACGCCCCTTGGTTTTCACTTGGCCCGGCTGCCTGTGGAGCCTCACATTGGGAAGATGATCCTGTTCGGGGCATTACTGAGCTGCCTGGATCCCGTCCTCACCATAGCCGCCAGCCTCAGCTTCCGAGATCCCTTCGTCATTCCCCTGGGTAAGGAAAAGGTTGCAGATACAAAGAGGAAAGTACTGTCAAAAAACTCAAAAAGCGACCACCTGACAATTGTGAATGCATTTTGGgGATGGGAGGAAGCCAAGAGACGGGGCTACAAAGCAGAACGAGATTATTGCTGGGAGAACTTTCTGTCTGCAAACACACTCCAGATGTTGCACAATATGAAAGCACAGTTTGCAGAGCACCTGCTGGCAGCTGGATTCGTCCGTAGCAAAAACCCCAAAGACCCCAATTCCAACATCAACTCGGACAACGAGAAGCTAATAAAAGCTGTGATTTGTGCTGGCTTGTACCCCAAAGTTGCCAAGATACGACCTAGTTTCAGCAAGAAGCGAAAAATGGTGAAGGTGTACACCAAACAAGATGGCAAAGTTAGCATCCACCCTAAGTCAGTGAACGCAGAAGAGACTGAGTTTCACTACACCTGGCTCATCTATCACCTGAAGATGAAGACAAGTAATATTTTCCTGTATGACTGCACAGAAGTCTCCCCTTTTTCTCTGCTGTTCTTTGGAGGTGATATCTCCATACAAAAAGACCAGGACCAAGACACAATCGCTGTAGATGAGTGGATTGTTTTCCAGTCTCCAGCCAAGACAGCGCATTTAGTAAAGGATTTAAAGAAGGAGCTCGATAGGCTCCTGCAAGAGAAGATTAAAAACCCTCAGCCGGTGGACTGGAACGACACCCGGTCGAAAGACTGTGCAGTCATCTCGGCCATCATCGACCTCATAACCACACAGGAGACGACTGCGGCCCGGAGCTTGTGCCCCCGCTTTGGTGAAGACTACTACAACTAACATTCCCGAACAGGCTTGTAACTGGTCTTTTGAAGTAGGAGAATTTCTACAGATCAGCTTCActgacatttttatgtatttaaaaaaaggaaagaagaaaaactcaCTCTGAGACCAAATTCATGTTTGCTTTgggatttatttcattttttcattatttttttatgtagcaTGTCTTGTTTCAAGAATCCTAAGATGTAAGGAAGACGCTTTGAGCCTTATGGATGATGTTTCGTCTagttatattaatttgtaattcaccGTCTCAAATAGCTTTATTTTAAGCTTGATGTATTATAATGTTCCTTAGGATATTGAAAAGATGCAAGAATTTGGTGTAGTTGTGAACGGTCTGTACTTTAAAGTTGATGCATGAGCATTTTTGACATAGAGATACAATTACCGCAATGTATCTGGTATCATGttgttgacaaaaaaaaaaaaacttgggaAGAATTAAAATTGTTGTCTGCCTTAATGTTATCTATGGCTTTTACGCAACAATAGGTTCACACAGCATCAGCGTATGCATGTTTAGGAACGTGCTTATTCTTTCCATTATTACTTCTGTGGAGAAAAAGTGGACAGATGTCCTGGGAGTGGGAAGGTATTCctgtaattaaatatagacTTTACAGCTATACGAGCATGCTCAGCTACAAGATTCAATAGCGATGAGTCACAGACGATCGTCATCCACACGGATGGACAACAACTGTGATGACTATATGGAGACTTGATTTCACAAGTAAGTCGACactacttctgttttttttttttttggtagaaaCTACAGTATACATAACATTATTGAATTACAAGTGTAAAATCTATTGTGCTCTAGGAAACCAATGGTGTCCTTACACAGCGTGTGGATCTGAGCATCTGTTCCTGGGCTGTAGAACATTACTGGCACAGAACCTGCAAAAGGGAGGTAGGAGAAGCAGGATTATCAAGACTAATTGAGAGGGCCTGGTTGTGGGGGGGTTCTCAGGGGGCTTCAAGTCCACTGACATTGCAGAAGATGCAGGAGAAGCTAAGGTGATGCAGGTGTCTTTTTGTGTACAGTAGAGATCCTTACCAAGCCCAATCTATATGATCAAttacttacaaaaataaaagcaaatgtgtatttttgatgTGAAATACAAATTTCTTTGCCACTCACCAATGCaaagacatacattttcttGCAGTGTGCCTTTAAACCACAATCTAGCCCTTCATCCATCCATGCTGACCATACAGAtatgtttctt

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009387 True 4564 mRNA 0.45 25 36704289 36731243

Neighbor

gene id symbol gene type direction distance location
AMCG00009386 NA coding upstream 6173 36690833 ~ 36698116 (+)
AMCG00009381 NA coding upstream 92360 36576217 ~ 36611929 (+)
AMCG00009379 NA coding upstream 158572 36528946 ~ 36545717 (+)
AMCG00009380 NA coding upstream 188563 36515194 ~ 36515726 (+)
AMCG00009378 NA coding upstream 287286 36410058 ~ 36417003 (+)
AMCG00009392 NA coding downstream 177853 36909096 ~ 37086094 (+)
AMCG00009393 NA coding downstream 355274 37086517 ~ 37087593 (+)
AMCG00009396 NA coding downstream 401986 37133229 ~ 37145082 (+)
AMCG00009401 NA coding downstream 453381 37184624 ~ 37192497 (+)
AMCG00009399 NA coding downstream 461262 37192505 ~ 37206412 (+)
G56629 NA non-coding upstream 72475 36627195 ~ 36631814 (+)
G56623 NA non-coding upstream 224914 36476438 ~ 36479375 (+)
G56584 NA non-coding upstream 669594 35927372 ~ 36034695 (+)
G56582 NA non-coding upstream 778094 35925938 ~ 35926195 (+)
G56567 NA non-coding upstream 833249 35870828 ~ 35871040 (+)
G56698 NA non-coding downstream 143835 36875078 ~ 36875398 (+)
G56694 NA non-coding downstream 169050 36900293 ~ 36975061 (+)
G56712 NA non-coding downstream 297963 37029206 ~ 37029542 (+)
G56747 NA non-coding downstream 457325 37188568 ~ 37188778 (+)
G56754 NA non-coding downstream 462483 37193726 ~ 37195088 (+)
G56536 LOC100846954 other upstream 1314962 35388914 ~ 35389327 (+)
AMCG00009345 NA other upstream 2335032 34363419 ~ 34369257 (+)
G56368 NA other upstream 2672844 34000796 ~ 34031445 (+)
G56369 NA other upstream 2685474 34015670 ~ 34018815 (+)
G56060 NA other upstream 4538924 32161760 ~ 32165365 (+)
AMCG00009404 NA other downstream 562660 37293903 ~ 37297009 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other downstream 616865 37348108 ~ 37367671 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other downstream 690774 37422017 ~ 37463505 (+)
AMCG00009429 NA other downstream 799579 37530822 ~ 37605124 (+)
AMCG00009428 NA other downstream 877062 37608305 ~ 37616696 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_03088253_03119757 DHX36 coding CI01000053 null 3088253 ~ 3119882 (+)