AMCG00009396


Basic Information

Item Value
gene id AMCG00009396
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37133229 ~ 37145082 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009396
ATGAAGGTGTTCAGCCCAGGAACTGTATACCTACGGTGGAGGACACTGgcatttttatgcttttttgcCAAAATCTTACAGAAAAGCAGTGGCTGTCCAAAGTCATGCGCCTGCTACATTCCCACCGAAGTGCACTGTACCTTCAGATATCTCACAGCTATACCAGGCGAAATTCAGCCAGATGTGGAACGCATTAACTTGGGGTACAACAGTTTGactacattaaaagaaaatgatttcaCAGGGCTGAAACACCTGGAATTGTTAATGTTGCATAGCAATGCAATACAAACCATAGAAAATAAGGCCTTGGGCGATTTAAAGTCTTTACAGGTTTTGAAGATGAGTTACAACAAAGTTAAAGAAATTAACAAGGAAACATTCCGGGGCCTACAGAGTCTGGTAAGGCTGCACATGGACCACAACAAAATAGAGTTCATTAACCCTGAAGCGTTTTTCGGACTCACTGCACTGAAACTAGTGCACCTTGAGGGGAACTTATTGCAGCAGCTTCACCCAGACACCTTTGTCACCATGCGCTACAGCCAGATCTTTAAAATATCATCCgtcaaaaacattttcctctCAGACAACTCCTTCAGGAGCCTCCCACCAGAGCTGTTCTCCTATTGCACTGGGCTGGAGAGTGTCTACATGCATGGGAACCCGTGGCAGTGCGACTGCTCCATGCAGTGGTTTGTACAGTGGGCCGAAGAGAACCCAGgggTTCTGAAGTGCAAGCGAGACAGGAGGGGTCAGCAGTGTCCTTCCTGTGAATCCCCAGCTGCATCCAGAGGAAAAGATATCGCCCGGCTGCCTCCAGCCACATTGTCCTGCTATCAGCCCTGGATACATCCACATCTCAAACAGAAGAATATCAGCATTGATCAGGGGGAGTTCACTCCTGTTTCCTCCAAGGACTTTATTGCGCCCATTGGGTCCATGGTGCTGAACATGACAGATCAGTCTCAAAATGACGCGAGTGTTATTTGCACAGTTCAAAGGCCAAATGCAATGACAGGTGTGTCATTAGAGGAAAAGGATGACATGCTGATCCTCAGAGCGTCTTTAGCCACGTTCCTGGTCTGCAATATTGACTATGAGCACATCCAGCCACTTTGGAAGATACTGGCCACCTACAGCGACATGCCCATGAGACTGGAGAGAGGGCTACTGCTTACAAAGACACCATCAATGATTTACAAATATCACCAGAAGCAAGCTAGCGAAGAAGAGGATGTCTTCACTGCCATAGAGGCCGAGGTGAAAGCAGACCCCATGTGGCTCATGCAAGGAGAGTTCACCTTACAGCTGGACAGGGCAACTACGACATTCACCACTTTGCACATCAAATACTTCACAGACTTTCAAATGAtactagaaaataaaataccaaagtCACAGAGATACAGCTGGGCGTTGATCAGGAAAGACAATACCACGAAGACGGAGCACTCAGTTCTGATTGGAGGGACAGCAGAGCTGGAGTGTCAAGTCTCTGGGGAGCCAAAACCCTTGATCGAGTGGATTTTACCAGACGGGAGCAAAGTCCGCGCACCGTATATAAGCGAGGACAGAAGGATTATAATTTTGGATACTGGGAAACTTACTCTAAGAGCAGCAGACAGCTTTGATACAGGGCTATACCGTTGCATAGCCACAAACTACCTTGATGCAGATTTGCTTACCTACAGGATTACAGTTGTAAATCCAGAGGTGGAAGAAACAGATGTAAATGGTGTAAAAATCGCCCAGTCTCTGGGCAGCAGTCTGTATCTTCATTGTGGCTCTGAGGGCAACCCTGACGCTACCATTAACTGGATTTTACCAGACCATTCAGTGTTAGATAAGTCTTTTGGACAAAGAAAACTTTTCCCAAATGGAACCTTAGCCATTGATGGACTTACTGAGAGGGACCGTGGATTTTACATATGTCTAGCAGCCAATCACATGGGGGTGGATTTTTTGTTATCAAGAGTAATGCTTTCAGGTGCCGCCAGGAATAATGTAGCGTTGAAGGAAACAAAGAGGATCCTGTCAGAAGGCGAAGGGTCAGGAAATGAGCCTGACTCCCCCTCAGAGGAAACTGAGGAAAACTACAATGCTCTCTCCCCAGGTGTTTCCAACCGGACCAGACAAGAATCTAGGACTATTACTTCAGACAGACCTTACCCCAGAAGGAGAATAACACAAGGCAGAACCTCTGGTGATTTGACACAAAGAAGAAATGGATTTTCAAGCAATACACGTAGAGTGGGGGGAAGAACTACCTTTGATAAAGCCTTAAGGAAAGTAGATCCACAACAGTGGaccaaaatcatgaaaaaagcacagaaacataAAGCTTCTGAGGGTCAAGGGGAAATCACAACCAACGGGATATTATCAAAAACTAGTTCAGGGCTCTCTGGGGATGGAGAAGAAGCCTCGGGAGATGCCTTGACAGAGGACGACTTTTTGGTAATAGCAATGAGCCCTGCTTCAAGTACTATACAAAATCCAAACCAAGAGACAACCACTCTTTATGTCCAAACATATGCACTGCCAATAGCGTCACCAGCCACCCCTGTCACAATAGGTCACCATGGCAATGCCAACATACTGACTACAAAGCCAACACCATTAACACCTACACTGCACAGTACTGTTACTAGCAGTCCAGGTTTAAATGTAACAGATGAACttgacaaaaaaacagaccagCCTTTGCCCCAGCCTGTTACGCTGAAATTGAGAATAACCGAATCAACAAGTGAAATGCAACCGAAGTTTTCTAGCAACACAACAGATACAGCAGCCAGTGTTGTCCCATTACTTATGACTTCCATGATTGACAAACCTGGGCCTGTGCCAGAGCCTGTAGTTCATACTGCAACGTATCCCAATGGAAAAGCATCATTCACGGCCGTCACAACCTCAGAAGGGGAAAATGATGAAATCCTGTTTCACACCACACAGAAAATCACCTCCCCTCGTCTGCCTTCGGGTTCTACCATAATATCTCACCAGCAGATCCAGATTATCAGAGGAGACACGGCTCACTCAGACAAGGTACGTTctggcaaaaaaagaaaatttcCCAGTAGGCGAAGAATTATCAGACCAAACAAGATAACAGATATCTCTGCGTATTTGAATAAATTCTCAAAATCTATCAAAAAGCCTGCTGCGCATGACAAAGACAACACCACCATGCCAGCCACCATAGAGCTAACCACAAAGTGTGAGTGCCAGATTACAGACATGCCATTGGGCAGTTCATTAGCAAAGCCAGCAGCAACTGAAAGCGATGCAACTAACTCTCACAGAAAGACAAAAGGTAGCATTAGTGTGGTCACACCAACCTCAGGACCCAATATCCAGAGTTCCACTCAACTTAAAACAACTAAACCATGGCCAGTGACTTCAGAGAAAGTATTAGATACCTCCACATCATCTCCACTTACAAGAATTGTCACATCACAGACACAATTTGTAAAAGTCATAACTCAGTCTCCTACAACAGAGCCCATGGCTACTTCCAAGTCAACCACAGGAGCACCAGGCTCTTTCAAAAAGTCTGCCTACCCTCAGGCTGAGCACACAGAAGCTCCCAAGTCAGCTAAAAGCACAAGCAAACCTGACAGATTCTACACAACAACCACTAAAGCCAGCATATCAGCCTCCAAAGTCATCCGAGGTAAAATTCCTTGGCATAGACTTTTTGGGAACAAGCCAAGCCAAAAAGAATTACTTAACAGGTTGCGTAGGCCAGTCAAGCCAATAACCATCACCAAGAGACCCCCTGCCAGAATGACCAGCACCACTGCTCCAGCACAGATATCATCTGTCCTGCCAACAACCAGAGCCCTGGCTTCACCAATTACAAACTTACCAACACTGACCGAAAATAAGGCAGTCATCCAATCATCGGTGACCTCTTCTGATTATTCCTCTGGGTCTGCGTCCACCACTGAGGCTCAGCCAGCTTCAAAAGTCATAATTTCACCTGTGACCGCCAAGCCAAGGGTTAAGGATAAGACTGCAGGCAGCAcgtataatgaaaacaaatctgaagtcTCCATGGCAACAACTACAGCTGCAAGAAAGGCATCTGCATCCGGTAGCAACACTAAAACAAGAACAGGAACGTTCAGAAAGCACATGGGACTTCCAAGAAGAAAAGGATTTAGACGGATGAGACCAGGCAAAAAGACCACGACAACCACGCAAACCACAACGGCTCAGATCAAGGAAATGGAAGCTCCTGTTACTTTGAAAGCCACCACACCAGCAACCAAAGCAGTCCAGCCTGTCATTACAAGTGTACTCTCAAAGCCATATCAGCCTGTATTTCCAGTCATTATGCCTTCTGCAGAGGAAGAACATAAAGCTTACAGTACTTTGACTGCAAAACCCACAACCGCAGCTTCTTCAATCAGACATTCCAGAATTGAAACGAGCATTAAATCTGAAGGAAGAGGAAGTGCTGCCACCTCCCCATCCCCTAAAGCAGGATTATTAACACCTGTCCAAAccaaaacagcaacagaaaaagcTGTAGTAGCACCCGTCAAAACTACAACCACAGTTAAGCCCACAACTCCATTTATAACCAAGTCCATATCCACCACTACAAGGCCAGTTACAAGAACAAACCTGAGAGTACCCCCCTCGACTAAACCCATCAGGTTAACAACACAAAGAGCCACTTTTAGTAATGTCACACCCACGGCATTTTCAGCTACTGTGAGAGACAGTAAATCTCAGGATGGCAGTGGCCGCTTCCTATTCAGGCCAAAATCACATAAGCCCACCCGTGCTACATTTACAAAACCAGAGAAACGGACACAATCTACTGTATCGAGCAGCAGGTTCTGGGAGAAACCTAAGTCTGAGGCCACAGCCAAAGGAAAGACTTTGATCCTTGACACCCTGACTATACTTACAGCTGAGCAGGCCTACACTAACTCTCCAGCCCCTTTCAGCTGGGATAAAGATAATACCATCGCTAACAGGTATGACAAACTCCCTGAATTTGAAGCATCAACATCTAACGTGATCGCTATGGAGCCATCGCCCAAGGACCAGCCATCGAAACCCAGAATAGTGGGGGGAAATGCTGCCAGCTTCACAGTGCTTTCCAACTCAGATGCATTCCTGCCCTGCGAAGCTATTGGAAATCCTGCTCCCACATTAAGCTGGATCAAAGTGTCCTCAGGGACTACTTTGACAATGAAGGCCAAGCGTGGAAACAGATTTGAGATGTTTAAAAACGGAACACTGTCTATTCAGAACGCCAACATTCAGGACCGCGGACAGTACCTCTGTCTCGCAGAAAACCGGCACGGGTCCGACAAGCTCCTGGTCACGCTGTCCGTGGTGGCGTACCCCTCGCGAATCCTGGAGCCGAAAGTGAGAGATATCAAATCCCACTCCGGAAACACGGTAGAAATCAAATGCAAAGCTGAAGGCAGGCCCATTCCTCTTGTGTCTTGGATCCTTGCGAACAAAACTGTGGTCAGGGGATACAGCTCACGCGAGAGCAGAGTGGCAGTGGCAGCAGATGGGACGCTAACCATAAAGGAGGTCTCTGTGTACGACAGAGGTCACTATAAATGTGTAGCCAGCAATCCGGCCGGGGTTGACACCGCTACAGTCCAGCTGCAGGTGGTTGCTGCTCCCCCAGGTATTGTGGAAGACAAAAGGCAGCAAGTCAGGGGAGAAATCGGGCAGCACCTCAAGATGCCCTGTACAGGCAAGGGAAGCCCTCAGCCTACCATTCACTGGGTCCTTTTCGACGGGACTGTGGTGAAGCCTTTGCACTACATCAACCCCAAGGTGTTTGCCTTTCCCAATGGAACGCTGTACATTAAAGACCTGGCAGTGTCCGACAGCGGCAAGTACGAGTGCATCGCCACAAGCTCCACGGGCTCTGAGAGACGAGTGGTGAACTTATTGGTGGAGCAGAAGGAGACGGTGCCCAGAATAGTGACCGCCTCCGACCGCAGGACCGACCTCAATTATGGTGACCAGTTGCAGCTGAATTGCTCGGCGTTTGGAGACCCCAAACCCAGGATTATGTGGAGACTACCTTCGAAAGCTGTTGTGGATCAGTGGCACAGGATGGGAAACCGGATCCACGTGTTGCTCAATGGCAGTTTGATCATTGATGCCGTGAGTGAAAAGGACGCTGGAGACTACCTCTGCGTTGCCAGGAACAAAATCGGCGATGACTTTCTACTCATGAAAGTAACTGTGTCCATGAAACCAGCAAAGATAGAATACAAGCCCTTCATTAAAAAACAGGTGACGTACGGCAATGACCTGAAAGTGGACTGCAAAGCGTCTGGAGCTCCTGAGCCAGAGATCTCATGGGGCTTGCCTGACGGAACCCTGCTGAACAGTGTTCTGCAGGCCGATGACAATGGGGGCAGGAGCCGGCGCTACGTTCTGTTTGACAACGGAACCCTGTATCTTAATAAGGTTGGGATGTCCGAGGAAGGAGATTACACTTGCTACGCAGAGAACACATTGGGCAAGGACGAGATGAAGGTCCACATCACAGTGGTGACAGCAGCTCCTCGCATCAAGACGCCACAAAATACGTACACCAAAGTGAGCTCGGGGGACAAGGTGATGTTTGACTGCGAGGCCATGGGGGAGCCAAAGCCAAAGATCCTGTGGCTCCTGCCCTCGAATGACATGATTGCAGCTTCCAATGACCGGCATCTGATGCATGTCAACGGCTCCCTGGCCATTAGGAACGTCAAAATAACAGATGCTGGGGAATACGTGTGTGTGGCACGCAATTCTGCTGGGGATGACACCAAGGTTTTCAAATTAGAAGTCAACGGAAATCCACCCACAATAAATGGTTTGtacatgaacaaaacaatagTGAAGGACACAGCCATAAAACACACCAGGAAATTAATTGACTGCAAGGCTGAAGGGACTCCTACACCTCAGGTCATGTGGATAATGCCAGATAACATTTTCATCACCGCTCCCTACTACGGCAGCAGAATAATAGTTCACAAAAACGGTACACTGGAAATTCGCAACGTCAGGCCTACGGACACGGCCGAGTTCATCTGCGTGGCACGTAACGACGGAGGCGAGACTGTCATGATAGTTCAGCTTGAAGTCACAGACATGCTGAGAAGGCCCATGTTTAAGAATCCATTCAATGAGAAAGTCATAACCAGAACAGGCAAAACCACCATCTTGAATTGCTCAGCTGATGGTCACCCCCTTCCTGAAATAATCTGGCTTCTACCCAATGGGACACGATTTACCAACAGCCAACGGATTTTAAGGTACCAGCTGGGAAACGACGGCACCTTTATCATTTACAACCCCAGCAAGGACGACGCCGGTAAGTACAGGTGCGCTGCCAGGAACACAGTTGGTTACATTGAGAAGCTGATTGTTCTTGAGGTGGGTCAGAAGCCTTACATACTCACCAGGCCAAGAGGCATCATTCGAAGTATCAGTGGAGAGCCGCTATTCCTACACTGCCTCGCTGACGGCAGCCCCCGCCCCAAAATCACCTGGACGGTCCCCGGAGGACACATGCTGTTGAGGCCCCAGATAAATGGGAAGTTCATGCTCCTCGACAACGGGACCCTCGTCATCAGAGAAGCCAGTCTGCATGACAGAGGAAATTACATTTGCGCAGCGAAAAATGATGCAGGGGAGGCCACGGTTACCATCCCTGTGATTATCATTGCCTACCCCCCTCGCATTACCAATGGCCCCCCGCAAAGTGTCCGTGCACGGAAAGGGGTGCCAGTACACCTCAACTGCATGGCCATCGGGATTCCAAAACCCGAAATCACGTGGGAGCTGCCGGACCACTCGGTGCTGTCCACCGCCGGCAAGGGTCGGCCCACGGGCAGTGAACTGCTCCACCCGCAGGGCACCCTGGTCATTCAGAAGCCCACGCATTCCGATACCGGCACCTACAAGTGCATCGCCAGGAATCATCTCGGCACTGACTCTAAAATAACATACATTCAAGTGCTGTAACACAGTTCTCTACAAATGGatctcttttgttttgattgcaCATGTTtggccatttttttttattttttttttaaatgaccgtTAACAGTTCTTATTTCTGGAACTTATAAACTTCTTAATTCTCACTTTTACAAGCAGTAAGcagaaacaaacagcaaaacaaagagaaaaaaagtgggagagaaagagagattgtACATTGGACTGTGAATTGGCAGAGAATCCAGCaaagtgattatttttatagtaaaaatgttttgcatttaaggCTTCAGGGCAAATGAAGTCTGGAGTGGAATTACATGTGGAAAGACTGCAGGTTTTTAACATCATCAGAGATATTGTTACAGTTCTGGAATGATTGTCTGGAAACATTAATGGTCTTTTAAAGTCCCATAGGAATGTCTCCCAAAGTGCATGTTTCAGATAATATACACAGTAGACTTACTTATGAACAATTTTGGAAAGGCACTGTGGATGTATCAACAGTTAccatttttttccatattttacagtattaaactgcattatttGGAGAGGGCTGGATATATTTTCTTACAGATTTTACACTGGAAttaccttttattttgtaatagcTAAATACTTCAAACAGAATACACCTATATTAAGaattataagaataatattgtcatgttatttttcttgtatctTTTCAGTTTCGGCTTCCATACTatgctgccattttttttataaacattg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009396 True 8733 mRNA 0.47 7 37133229 37145082

Neighbor

gene id symbol gene type direction distance location
AMCG00009393 NA coding upstream 45636 37086517 ~ 37087593 (+)
AMCG00009392 NA coding upstream 47135 36909096 ~ 37086094 (+)
AMCG00009387 NA coding upstream 401986 36704289 ~ 36731243 (+)
AMCG00009386 NA coding upstream 435113 36690833 ~ 36698116 (+)
AMCG00009381 NA coding upstream 521300 36576217 ~ 36611929 (+)
AMCG00009401 NA coding downstream 39542 37184624 ~ 37192497 (+)
AMCG00009399 NA coding downstream 47423 37192505 ~ 37206412 (+)
AMCG00009402 NA coding downstream 70949 37216031 ~ 37216975 (+)
AMCG00009403 NA coding downstream 72004 37217086 ~ 37234594 (+)
AMCG00009397 NA coding downstream 99151 37244233 ~ 37249694 (+)
G56712 NA non-coding upstream 103687 37029206 ~ 37029542 (+)
G56694 NA non-coding upstream 158168 36900293 ~ 36975061 (+)
G56698 NA non-coding upstream 257831 36875078 ~ 36875398 (+)
G56629 NA non-coding upstream 501415 36627195 ~ 36631814 (+)
G56623 NA non-coding upstream 653854 36476438 ~ 36479375 (+)
G56747 NA non-coding downstream 43486 37188568 ~ 37188778 (+)
G56754 NA non-coding downstream 48644 37193726 ~ 37195088 (+)
G56775 NA non-coding downstream 140761 37285843 ~ 37291665 (+)
G56982 NA non-coding downstream 918708 38063790 ~ 38068153 (+)
G56995 NA non-coding downstream 985000 38130082 ~ 38133966 (+)
G56536 LOC100846954 other upstream 1743902 35388914 ~ 35389327 (+)
AMCG00009345 NA other upstream 2763972 34363419 ~ 34369257 (+)
G56368 NA other upstream 3101784 34000796 ~ 34031445 (+)
G56369 NA other upstream 3114414 34015670 ~ 34018815 (+)
G56060 NA other upstream 4967864 32161760 ~ 32165365 (+)
AMCG00009404 NA other downstream 148821 37293903 ~ 37297009 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other downstream 203026 37348108 ~ 37367671 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other downstream 276935 37422017 ~ 37463505 (+)
AMCG00009429 NA other downstream 385740 37530822 ~ 37605124 (+)
AMCG00009428 NA other downstream 463223 37608305 ~ 37616696 (+)

Expression


Co-expression Network