AMCG00010100 (smad7,LOC106561252)


Basic Information

Item Value
gene id AMCG00010100
gene name smad7,LOC106561252
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 14809006 ~ 14829310 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010100
ATGTTCAGGACCAAACGATCGGGGCTCGTCCGGCGACTCTGGCGGAGTCGTGCGCCCGTGGAGGGCGACGGGGAGGCGGATACTCGCACGCATGGCACCGGGGGCTGCTGCATGGGGACATCGGCTAAGGTTTCCAAATCTCACCCCGGGACGGAGGCTGAATTGAAGGCACTGACCCATTCGATACTGAAGAAAATCAAAGAGAAACAATTAGAGGCGCTTTTGCAGGCGGTGGAGTCGAAAGGGGGTGCGAGGAGTCCCTGTCTTCTCCTCCCCGGCAAAGTGGACTCCAAACTGGGTCAGCACACGTACTCGCTCCCCTTGCTGCTCTACAAGGTGTTCAGGTGGCCGGATCTCAGGCATTCCTCGGAATTAAAGAGGCTCTCTTGCTGTGAATCTTATGGGAAAATGAACCCGGAGCTTGTCTGCTGCAATCCTCACCACATGAGCAGGCTTTGTGAACTAGAGTCTCCCCCTCCTCCTTACTCCAGATACCCAATGGACTTTCTTAAACCACCTGATTCTCCAGATTCTGTGCCTTCCTCCACTGAAACTGGGGGAACTAACTTTTTAGCCCCTGGGGGGTTTTCAGATTCTCAAGCTCTGCAGGAGCCCGGGGATCAAGCGCACTGGTGCGTGGTGGCGTACTGGGAGGAGAAGACCCGCGTGGGCCGCCTCTACTCGGTGCAGGAGCCTTCCCTGGATATCTTCTATGACCTACCTCAGGGGAACGGCTTCTGCCTTGGTCAGCTCAACTCAGACAATAAGAGCCAGCTGGTGCAGAAAGTGCGTAGCAAGATCGGCTACGGGATCCAGCTCACGAAGGAGGTGGACGGGGTGTGGGTGTACAACCGCAGCTGCTATCCCATCTTCATCAAGTCTGCCACACTGGACAATCCAGACTCCCGGACGTTGCTGGTTCACAAAGTGTTCCCTGGATTCTCCATCAAGGCTTTCGACTATGAGAAGGCCTACAGCTTGCAGAGGCCCAACGACCATGAGTTCACTCAGCAGCCATGGACCGGCTTCACTGTTCAGATCAGCTTTGTGAAGGGCTGGGGCCAGTGCTACACAAGACAGTTCATCAGTAGCTGCCCCTGCTGGCTGGAAGTCATCTTCAATAACCGATAG

Function

symbol description
smad7 Predicted to enable I-SMAD binding activity and transcription regulator inhibitor activity. Predicted to be involved in several processes, including cell differentiation; regulation of transcription by RNA polymerase II; and transmembrane receptor protein serine/threonine kinase signaling pathway. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in cytoplasm and nucleus. Predicted to be part of heteromeric SMAD protein complex. Is expressed in several structures, including axis; ectoderm; immature eye; midbrain neural tube; and nervous system. Human ortholog(s) of this gene implicated in colorectal cancer and pancreatic adenocarcinoma. Orthologous to human SMAD7 (SMAD family member 7).

NR:

description
PREDICTED: mothers against decapentaplegic homolog 7

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19631 SMAD7; mothers against decapentaplegic homolog 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010100 True 1131 mRNA 0.56 4 14809006 14829310

Neighbor

gene id symbol gene type direction distance location
AMCG00010097 zbtb7c,LOC106568492,LOC106561213 coding downstream 262892 14539903 ~ 14546114 (-)
AMCG00010092 NA coding downstream 529079 14260739 ~ 14279927 (-)
AMCG00010090 LOC105901120,LOC105014579,LOC107558977 coding downstream 1096635 13703397 ~ 13712371 (-)
AMCG00010091 LOC108435138,LOC105014579,LOC106585820 coding downstream 1133340 13643088 ~ 13675666 (-)
AMCG00010088 NA coding downstream 1173606 13578716 ~ 13635400 (-)
AMCG00010104 NA coding upstream 59154 14888464 ~ 14896353 (-)
AMCG00010103 dym,LOC106561256 coding upstream 96698 14926008 ~ 14927943 (-)
AMCG00010105 dym,LOC106568454 coding upstream 114244 14943554 ~ 14948207 (-)
AMCG00010106 NA coding upstream 174737 15004047 ~ 15014881 (-)
AMCG00010107 NA coding upstream 199808 15029118 ~ 15032168 (-)
G77895 NA non-coding downstream 289384 14513928 ~ 14519622 (-)
G77896 NA non-coding downstream 297060 14505438 ~ 14511946 (-)
G77887 NA non-coding downstream 362865 14441616 ~ 14446141 (-)
G77878 NA non-coding downstream 401186 14407618 ~ 14407820 (-)
G77852 NA non-coding downstream 637424 14171311 ~ 14171582 (-)
G77975 NA non-coding upstream 129750 14959060 ~ 14961505 (-)
G77988 NA non-coding upstream 210250 15039560 ~ 15074454 (-)
G77992 NA non-coding upstream 248280 15077590 ~ 15077845 (-)
G78014 NA non-coding upstream 353802 15183112 ~ 15183394 (-)
G78097 NA non-coding upstream 802338 15631648 ~ 15633208 (-)
AMCG00010082 NA other downstream 1338751 13347541 ~ 13470255 (-)
G77544 NA other downstream 3079841 11728503 ~ 11729165 (-)
AMCG00009989 NA other downstream 6487662 8314109 ~ 8321344 (-)
AMCG00009987 NA other downstream 6601679 8195735 ~ 8207327 (-)
AMCG00009962 NA other downstream 7519312 7284862 ~ 7289694 (-)
AMCG00010142 LOC104932682,LOC108255669 other upstream 1380009 16209319 ~ 16224041 (-)
AMCG00010169 cnot6l,LOC107752360 other upstream 2453336 17282646 ~ 17295515 (-)
AMCG00010183 stoml2 other upstream 2644519 17473829 ~ 17478791 (-)
AMCG00010188 NA other upstream 3011397 17840707 ~ 17844389 (-)
AMCG00010190 NA other upstream 3023557 17852867 ~ 17855821 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000188_00246336_00264183 SMAD7, SMAD7.L coding CI01000188 null 246336 ~ 264344 (+)