AMCG00012447


Basic Information

Item Value
gene id AMCG00012447
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18329924 ~ 18350901 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012447
ATGAGGTTGTTCTGCAGCTCGAGAATGGCGGACGCAGATCTGTTCATGGAgtgtgaggaggaggagctggagccATGGCAACAGATGAACGATGACGTGGAGGATGAGGCCGTGGAGGAAACGAGTGTGACGGATCGCAAAATCACAGCGGtgtccTCTGGCATGCCGGCGCTCGTGGCGGCCCCGCCTCCACCAACCCTGGCCCCGCCCCCTGTCGGATCACGCGTGACCACGTCCGTCTCCGTGCCGCCCCTCGTGGTCTCCAATGCCGATGCCGCCAAGAAGACGGTGGTGACGCTGTTCACCAACACTGGCTCTCCGGTGTCTTCCGTGGTCCCCCCCGTGGCCCAGATCGCCGCACCTCCCGCCACGCCCTCGCTGGTGTCCCCCGCGGTGCCGCAGGCCATGCCAGCACAGGGGCAGCAGCTCATCTTGACGCAGAGCCCCGGCGGGCTGAGCACAGTGACCATGCCCCAGATGCTGCAGCCCATGCAAGTGATGCCCAGCGCTGGGCCGGGCGGCAGTGGCGTGACCAACCAGCCCTTCTTCATCACCACGCAGGGGTTTCCTGTGAGGAACGTGAGGCCGGGCCAGAACTCTGTGAACCCACTGGGCATTGTGCTGAACGTTCAACAGGGCCAGACAGTCCGACCCATTACCTTGGTGCCAGATCCGGAAAAGAGCGAAACTGTAAAAGTGCCAAGCCCCGAGCGAGACGAGTCCCCCAGGAAGAGGAGGCGGCGCTGCAGAACCTTCCAGAGCTGGTGGAAACTGGAGTTTGATTGGATCGAAGCGAGCGAGCAAGGGCTGCAGCAGGCATACTGCACCGTCTGCGACTGCGATTTCACCGTGGAGGGGGGGATGGAGGATGCCAGCCGGCACGGGGTGAGCCCGCAGCACCGAGCCAACCTCCGCACGTGGTACCCCGAGGAAGGAGGGGCGGTGGCGAACCTGGCACCCAAGAAGATCTTTCAGAAGCTGTGGAAGGCCGAGTTCGACTGGCTGCAGTCGAGCAAGCGGGGGCCCGAGCACGCGTTCTGCACCGCCTGTGGCCTCGACTTCACCGTGAGCACCGGCTTGCAGAGCGTGAAGGTGCACGAAGCCACGGTCGGGCACCGGATCAAAGTCCTCGGGCAAGACGAAAAAGAATCCCAAGACAACGGCGGGCGCCAGGTGGCGTTCCAGAAATGGTGGACCGCTAGCTTCGACTGGCTGGGCGAGAGTGCCAAGGGCCGGCATCACGCCCGCTGTTCGGTCTGTAGCGTGGATTTCTATCTGGAAGTGGGCCTGCGAGATGCCCGTCAGCACGAGGCCACTGCCCGGCACCAGGAAAACCTCAAGATCTTCGAAACTAAAACCCTGGAGGCCCTGTCAGCCCCTGGCACCCAGTTCTTCAAGCCCGCGGTGGGCGTGCCCCAGGTGCTCTCCCAGGTGACCCAGGTGAGACCCGGGACAGCGGTGCCCGGCCGGCCGCCCACCAGCACCTACACCACGGTGATCCCCGCCACCCTGACCATCCGCACCACCGCCGCCCCCAGCCACTGCCAGCCCGGCGTCAAGACCGTCACCACCATGAGCCCCACAAACGCCACCCAGCTGGTGCAGTCGTCCGCGCTCTCCTCCCCGGCCCAGACCATCTCGGTGCCGGCGTCCAAACTAGTGCCCTTGCCCAAAACGCCAACTGCCTCGGAACCTACAGAGCCCTCACCCAAAACTCCGCCTGCCTCGGAACCCTCGCCCAAAATGCCGCCTGCCGCGGAACCTACAGTGCCCTCGCACGTAAAGACACCGGCCGTGGAACCCACAGTGTCCTCTCGCAAAACGCGGTCCGCCACGGAACCCACGTTGCCCTCTCGCAAAAAGCCGCCTGCTGCGGAACCCGTGATGTCATCTGCCGTGTCGTTGGACGCAGAGAGGACGAGAAGGCAGCTCGTTCGATCTCCGCAAGGGTGCAACGCAGACGCCTCGTCGGCAGGGGATTCGGAAGTGCACAGAAAAAAGCCCAGGTTCTCCAGGGAAGACGAGGAGGACCTCCTCGCCGAGGTGGCGGAGCACTGGGACGAGCTCTTCGGCGGGCAGAGCCTCACCCTCCCCAGGGGCTCTAAAACGAACATCTGGACGGGCATCGCGGCGCGCATTTCGGCCTCCTCCCGGGCCCTGCGGGATGGCGAGGACGTGCGCAAGAAGTGGGTTTATATGAAGGGCACCTTGAAGCACAGAGCTGCGGCCCAGCGGACGGCTGCGAGCCAGACCGGCGCTGGATCCGCTCCCGGGATCGAGCTGAGCCCCTTGGAGCAGCGCGTGCTCTCTCTAATGGGGGAGGAGATCGTCGGAGGTCTGGAGGGTCCGGACTCTGAGCCTCGTCCTCAGGAATTGGGCCCAAGCATTGAGGTGGAGGTAGCGCTGGACCAGCCCGCCAGCCCTgtggctcctcctcctcctcctcctccccccgaGCGCCCCCCGGTGCCACCTGCCGCCAGGCCCATGCCCCCGGCTGCGCCACGCCCTCTGGGCCTCCCCCCAGACGCCACGCTCTCCCCggagctgctgctggtgctggacAGGCAGCAGAAGACTAATGAAATCCTGGAGGAGATGCTGGGCGTGCAGGCGGACATGAGGGACTCCCTGGCGCTGCTGGCCAAGGACATCCACCGGCTCGTGAGTGTGGTGATGGGAGAAGACGACGACGCCCCCCTGCCTGTCTCTGCTGAGGAAGTGCCCGTCTGTGCcactgcagcagcagcttcCCCACCCCACCCGGCGCCGCGTCCCTCAATGGAACTCTACACACTCCAGGCGGCCACGCCCCTCAACCCCACGGCCTACCACTACACCTATCCCTCCGGCTCCTACCGATACCCCTCGCTCCCCTTACCGTTCCAACCCGCCCCGGTCTTCCCCGCACCTCTCCCGTACTCTGACCCCTCTGCGGAGCCCTGGCCCCCAGTCCAGATGTCCTCCTTCGCGTACGCCTCACCCGGCTCCTTCCCCGAGGAATTCGTCCAGGACCACCAGCACCCGGCGGACATCCTTGTCCTAGTGGAGCATCCCCCCCAGCAGGACCTCCCTCCTGTGCCACAGCCCGCTGCACCGCCACCGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012447 True 3108 mRNA 0.65 10 18329924 18350901

Neighbor

gene id symbol gene type direction distance location
AMCG00012440 anp32e,LOC100707939,LOC102193634,LOC102789185 coding upstream 92736 18229745 ~ 18237188 (+)
AMCG00012431 NA coding upstream 150107 18174010 ~ 18179817 (+)
AMCG00012432 NA coding upstream 160180 18162576 ~ 18169744 (+)
AMCG00012429 NA coding upstream 323150 18002639 ~ 18006774 (+)
AMCG00012428 NA coding upstream 388362 17937937 ~ 17941562 (+)
AMCG00012446 NA coding downstream 2110 18353011 ~ 18375993 (+)
AMCG00012454 selenbp1,LOC107588475,LOC107556087 coding downstream 38930 18389831 ~ 18401677 (+)
AMCG00012451 LOC101076171,LOC102795628 coding downstream 51404 18402305 ~ 18414912 (+)
AMCG00012452 pi4kb,LOC107588477,LOC107556110 coding downstream 66062 18416963 ~ 18442351 (+)
AMCG00012453 NA coding downstream 94210 18445111 ~ 18466585 (+)
G136848 NA non-coding upstream 12848 18295215 ~ 18317076 (+)
G136842 NA non-coding upstream 60417 18261897 ~ 18269507 (+)
G136718 NA non-coding upstream 428268 17900908 ~ 17901656 (+)
G136571 NA non-coding upstream 665754 17663433 ~ 17664170 (+)
G136568 NA non-coding upstream 680817 17648628 ~ 17649107 (+)
G136866 NA non-coding downstream 82669 18433570 ~ 18470784 (+)
G136873 NA non-coding downstream 122332 18473233 ~ 18474916 (+)
G136969 NA non-coding downstream 264997 18615898 ~ 18653598 (+)
G137007 NA non-coding downstream 551611 18902512 ~ 18902871 (+)
G137016 NA non-coding downstream 581523 18932424 ~ 18933248 (+)
AMCG00012439 NA other upstream 195543 18130284 ~ 18134381 (+)
G136720 cct3,tcpg,LOC107597996,LOC107587818,LOC107741740,LOC107671634,LOC107704884 other upstream 426114 17902832 ~ 17903810 (+)
G136658 NA other upstream 486003 17840933 ~ 17843921 (+)
AMCG00012423 LOC102799202,LOC107564869 other upstream 534680 17792251 ~ 17795244 (+)
G136641 NA other upstream 562393 17764145 ~ 17767531 (+)
G136864 psmb4 other downstream 34388 18385289 ~ 18388306 (+)
AMCG00012460 NA other downstream 188644 18539545 ~ 18544490 (+)
AMCG00012471 NA other downstream 696596 19047497 ~ 19053829 (+)
G137083 NA other downstream 818847 19169748 ~ 19174421 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other downstream 886788 19237689 ~ 19238958 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010123 pogzb coding NC_007127.7 CM002900.2 38119004 ~ 38136670 (+)