AMCG00015367 (calm1,LOC102293206,LOC102778633,LOC107396020)


Basic Information

Item Value
gene id AMCG00015367
gene name calm1,LOC102293206,LOC102778633,LOC107396020
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8479116 ~ 8481362 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015367
ATGCAGACCGGACTCATGGCAGACCAGCTGACAGAAGAACAGATTGCTGAGTTCAAGGAGGCGTTCTCGCTGTTCGATAAGGATGGCGACGGCACCATCACCACGAAGGAGCTGGGCACTGTGATGAGGTCACTGGGGCAGAACCCCACTGAGGCTGAGCTGCAGGACATGATCAACGAGGTGGATGCGGacgGAAACGGCACCATTGACTTCCCTGAGTTCCTAACCATGATGGCGCGGAAGATGAAGGACACCGACAGTGAGGAGGAGATCAGAGAGGCCTTCAGAGTCTTCGACAAGGACGGTAACGGCTACATCAGTGCAGCTGAGCTGCGCCACGTCATGACCAACCTGGGCGAGAAGCTGACCGACGAGGAGGTGGATGAGATGATCAGAGAAGCCGACATCGATGGCGACGGACAGGTCAACTACGAAGAGTTTGTACAGATGATGACCGCAAAGTGATGTCCAGCTCCGAACGGACCCTGGCATTGTCATGTGTGAAGAAGTGTATGGACTTTCTTTTTCCAAccccttccttcctttctccccttctatttttttctacccccccccccccccccccccctctccatttttttttttttttttttccattctgttcTGTAACCCCGACCCCTGCACCCTGGCCTGTATGGACCCAGCTTTGATTCAGGCCCCCCTGCCCCCAACacacatgcttttgtttttttatgattttgaactTTTCTTTCCCTCCAGTTTAGTTTGGTCTCTATAAGCATGCCATTGTCACCAGTGCTTGACTGTGAGATTTAAAGATCACtatatgtacaaaaacaaaccataactaaatattttttaaagtttaaggCAAGAGAGAtgcatgttaatttgtttttgttagttttggtTTCTGTTCTCCCTCCCCTGTTCTGAAACGTACACTTCCCGTTTCCTGGTATGTGTCAGACACGGCTGCTCCCGGCATACACTGCTTCCCAAAGCTGACTTCCTGTCCCAGTCTGACTCTGGTTTTGTTTCATGTCCCTCACTGGGGGAGAAAGGTGTCCAAACTGGAGTCAGTGGGCTGAAAAACTAGATCGAGCTTAAAAAACCCAAACCAGCGACCAGTCA

Function

symbol description
calm1 Enables several functions, including N-terminal myristoylation domain binding activity; enzyme activator activity; and enzyme binding activity. Involved in several processes, including positive regulation of hydrolase activity; regulation of calcium ion transmembrane transport; and regulation of heart contraction. Located in microtubule cytoskeleton and sarcomere. Part of calcium channel complex and catalytic complex. Implicated in catecholaminergic polymorphic ventricular tachycardia 4 and long QT syndrome 14. Biomarker of Alzheimer's disease.

NR:

description
calmodulin

GO:

id name namespace
GO:0022400 regulation of rhodopsin mediated signaling pathway biological_process
GO:0001975 response to amphetamine biological_process
GO:0007190 activation of adenylate cyclase activity biological_process
GO:0045087 innate immune response biological_process
GO:0010881 regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion biological_process
GO:0051412 response to corticosterone biological_process
GO:0007202 activation of phospholipase C activity biological_process
GO:0005513 detection of calcium ion biological_process
GO:0002027 regulation of heart rate biological_process
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0030168 platelet activation biological_process
GO:0002576 platelet degranulation biological_process
GO:0038095 Fc-epsilon receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0035307 positive regulation of protein dephosphorylation biological_process
GO:1901841 regulation of high voltage-gated calcium channel activity biological_process
GO:1901844 regulation of cell communication by electrical coupling involved in cardiac conduction biological_process
GO:0043647 inositol phosphate metabolic process biological_process
GO:0043388 positive regulation of DNA binding biological_process
GO:1901339 regulation of store-operated calcium channel activity biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0051000 positive regulation of nitric-oxide synthase activity biological_process
GO:0048011 neurotrophin TRK receptor signaling pathway biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0005980 glycogen catabolic process biological_process
GO:0051343 positive regulation of cyclic-nucleotide phosphodiesterase activity biological_process
GO:0032516 positive regulation of phosphoprotein phosphatase activity biological_process
GO:0016310 phosphorylation biological_process
GO:0046209 nitric oxide metabolic process biological_process
GO:0006006 glucose metabolic process biological_process
GO:0060315 negative regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0060316 positive regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0007173 epidermal growth factor receptor signaling pathway biological_process
GO:0034704 calcium channel complex cellular_component
GO:0030426 growth cone cellular_component
GO:0005813 centrosome cellular_component
GO:0000922 spindle pole cellular_component
GO:0005829 cytosol cellular_component
GO:0005576 extracellular region cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0030017 sarcomere cellular_component
GO:0043548 phosphatidylinositol 3-kinase binding molecular_function
GO:0043274 phospholipase binding molecular_function
GO:0017022 myosin binding molecular_function
GO:0031800 type 3 metabotropic glutamate receptor binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0008179 adenylate cyclase binding molecular_function
GO:0030235 nitric-oxide synthase regulator activity molecular_function
GO:0019904 protein domain specific binding molecular_function
GO:0050998 nitric-oxide synthase binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0005246 calcium channel regulator activity molecular_function
GO:0072542 protein phosphatase activator activity molecular_function
GO:0031432 titin binding molecular_function
GO:0044325 ion channel binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0031996 thioesterase binding molecular_function
GO:0031997 N-terminal myristoylation domain binding molecular_function

KEGG:

id description
K02183 CALM; calmodulin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015367 True 1116 mRNA 0.50 7 8479116 8481362

Neighbor

gene id symbol gene type direction distance location
AMCG00015366 NA coding downstream 61340 8413410 ~ 8417776 (-)
AMCG00015360 NA coding downstream 126130 8351682 ~ 8352986 (-)
AMCG00015350 NA coding downstream 203249 8265796 ~ 8275867 (-)
AMCG00015347 NA coding downstream 219344 8249954 ~ 8259772 (-)
AMCG00015351 NA coding downstream 242332 8231238 ~ 8236784 (-)
AMCG00015373 NA coding upstream 5189 8486551 ~ 8494860 (-)
AMCG00015371 NA coding upstream 44670 8526032 ~ 8528682 (-)
AMCG00015375 NA coding upstream 53017 8534379 ~ 8535400 (-)
AMCG00015380 NA coding upstream 119965 8601327 ~ 8608308 (-)
AMCG00015379 ppp1r14b,LOC108268202 coding upstream 131894 8613256 ~ 8623716 (-)
G97475 NA non-coding downstream 45800 8431923 ~ 8433316 (-)
G97409 gng3,LOC107559409 non-coding downstream 352652 8124268 ~ 8126464 (-)
G97395 NA non-coding downstream 410079 8068780 ~ 8069037 (-)
G97244 NA non-coding downstream 463043 8001486 ~ 8016073 (-)
G97221 NA non-coding downstream 508359 7969597 ~ 7970757 (-)
G97536 NA non-coding upstream 115373 8596735 ~ 8598299 (-)
G97561 NA non-coding upstream 129585 8610947 ~ 8611396 (-)
G97562 NA non-coding upstream 131133 8612495 ~ 8634660 (-)
G97574 NA non-coding upstream 173811 8655173 ~ 8656821 (-)
G97575 NA non-coding upstream 182713 8664075 ~ 8668051 (-)
G97455 mark2a,LOC107715377 other downstream 67234 8409987 ~ 8411882 (-)
AMCG00015361 NA other downstream 109085 8361614 ~ 8370031 (-)
AMCG00015348 ehd1b,LOC107718765,LOC107720605,LOC106603140,LOC107548869,LOC106930329,LOC103471421,LOC103136898 other downstream 195487 8223199 ~ 8283629 (-)
G97411 NA other downstream 345001 8131307 ~ 8134115 (-)
AMCG00015333 nxf1,LOC105897453,LOC108417053,LOC106603139 other downstream 387290 8070035 ~ 8091826 (-)
AMCG00015374 NA other upstream 59826 8541188 ~ 8545795 (-)
AMCG00015372 lrfn4,LOC101077706,LOC106517947,LOC102210474,LOC101487083,LOC102311587 other upstream 98138 8579500 ~ 8582686 (-)
AMCG00015393 zgc:77262,LOC107715378,LOC107669316,LOC107568302,LOC108428054,LOC107567914,LOC108278748,LOC107700012 other upstream 308298 8789660 ~ 8794774 (-)
AMCG00015394 NA other upstream 347940 8829302 ~ 8838979 (-)
AMCG00015400 NA other upstream 473151 8954513 ~ 8960144 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009032 calm3a coding NC_007126.7 CM002899.2 9234052 ~ 9272328 (-)