AMCG00015372 (lrfn4,LOC101077706,LOC106517947,LOC102210474,LOC101487083,LOC102311587)


Basic Information

Item Value
gene id AMCG00015372
gene name lrfn4,LOC101077706,LOC106517947,LOC102210474,LOC101487083,LOC102311587
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8579500 ~ 8582686 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015372
ATGCGCCTCCTACATGCCCTCCCCCAATCCCCTTCCCTCTCCTTCCACCCTTCCTCCCTCCTGGCCCTGTCCCTGGcacttctctcctccctcctcctgaTGCTGGCCCCCACCACCTGCCGGGGCTGCCCGGTCCACTGCGTGTGCCAGAATCTGTCCGAGTCGCTGAGCACCCTCTGCGCCAACAAGGGCCTGCTCTTCGTGCCGCCCAATGTGGACCGGCGCACCGTGGAGCTGCGGCTGGCGGACAACTTCATCCGGGAGGTGGGCGCCCGGGACTTCCACAACATGACCGGCCTGGTGGACCTCACGCTGTCCCGCAACTGCATCCACCGGCTGGCGCCCTGCTGCTTCGGCGACCTGGAGAGCCTGCGGGCCCTGCACCTGGACGGCAACCGGCTGACGGCAGTGGGGGGCCTGGACCTGCGGGGGCTGGCCAACCTGCAGCACCTGACCCTCAACAACAACCAGCTGGTGTCCCTATCCCCACTGGCCTTTGAGGACTTCCTGCCCACCCTGGAGGACCTGGACCTGTCCTACAACAACTTGCGCCGCGTGCCCTGGGAGGCGATCCAGCGCATGGCCGCCCTGCACACGCTCAACCTGGACCACAACCTCATTGACCATGTAATGGAGGGCGCCTTCTCCGAGCTCTACAAGCTGGCTCGGCTGGACATGACCTCCAATCGGCTGCGCACGCTTCCCCCGGACCCGCTGTTTGCCCGCTCGCAGACCGGCGCCGTCTCGCCCACCCCCTACACCCCCGTGACCAACCTGAACTTCGGAGGTAACCCGTTGCACTGCAACTGCGAGCTGCTGTGGCTGCGGCGGCTGGTGCGCCAGGACGACCTGGAGACGTGTGCCTCGCCCCCCCCGTTGGCTGGCCGCTACTTCTGGTCCATCCCTGAAGAGGAGTTCACCTGTGAGCCACCCCTCATCACACGGCACACACATAAGCTGTGGGTGCTGGAAGGGCAGCGGGCCACCCTGCGCTGCCGGGCCATCGGGGACCCTGAGCCAGCCGTCCACTGGGTCTCCCCCGATGACCGCATCGTGGCCAACTCATCCCGGGCCGCCTCCTACCTGAACGGGACGCTGGACATCCTGGTGGCCACGGTCCGGGATGATGGGACCTACAGCTGCATCGCCATCAACGCAGCCGGCGAGTCCACTGCCCAGGTGGACCTCAAGATCATCCCGTTGCCCCACCGGTCCAACGGGAAGGGCATCGGGAGTGGGAATGGGGGAGGGGCCTCTGGGAAGGGGCCGCCTCCGCCACCTCCCCCGCCTGTTGTGCAGTCCCATGGCGATATCGCCACCTCGGCCAACGGGCGGGCGATGGGGGCAGGCATAGGCACAGGGATGGCCAATGGGAGCGGGAGCAGCGGTGGGGGCTGGGCCGGTGGGGAAGGGGGCGGGGCCCgggtggagggaggggagaggctAGTGGGGGTGCTAGATGTGACCGCAACGTCCGCGGAGGTGAGGTGGCTTCTGGGAAAAACCtcttctcctcctgctcctgctgcagctgctgcctcTTCATCagcctcctcttcttcctcttccacctcctcttcttcctcctcctcctcctcgcccaTTCTTGTGTGGATGTACCAAATACAGTATAACTGCACGGCGGATGAGACGCTGGTATACAGGATCCTGCCCTCCACCACGAATAGCTTCTTGCTGAAGAACCTGGTGTCTGGGGTGGATTATGACCTCTGTGTGCTGGCCATCTTTGATGACCTCACCACCAACATGGCTGCCACACGGGTACTGGGCTGTGCACAGTTCAGCACCAAAGAGGACTTCCCCCTCTGCCACTCCCTGCACCACCACTTCCTGGGTGGCACCCTGACTGTCATCGTGGGGGGTGTTGTGGTGGTGACCCTGCTGGTGTTCACCGTGACTATGATGCTCAAGTACAGAGCTTCTGCCAACACTCTGGGGCCAGGCTCCACCCCCTCCCATGGCCACTCGCCCAAAGCCATCGACGTCTACTCTCAGACCAATGGGAATGGGCAGATCTTCAACGGGGTGGTGACTCAGAGAGGTGCTGGGAGCGGGAGCGCCCTGATGCCTGTGCCCCCACCCCTGGTAGCGGCCTACAAGAAGGGAGCGTCCCCACATTTTGGCCCGGATGGCGAGAGCGTGGCCTTGTACTGTAGCGCAAAGCCCCCGCGCAAAAGGGGGCGCCCCAAGTTCAGGGGCGAGCTCGGGGGGGCGCCGGGATTGAGAGGGGGGCTGCCTGCGCTGCCCCCTGCCTCGGGGTGGACCTATGGGgcgggaggagagggggaggtggggagTTTCGCTGCCACAACCACAGTCGCCCACCACCAGCACTCCgctcccccacctcctcctccacacCCACCCCCTCTGCCCTGGGAGACCAGATCTCCCCGCTCCATGCACCATCACCACCCCCACtatccctcccccaccccactccctcctcctctgtcttcttcctcctcctccaccacctcctcccTGGTCCTCAAGACCAGACGCAGCTGCTCGTTCGACATGGGGGAAATGGGCACTGCCGCCACCTGCTACAGCTATGCCAAGCGGCTCAGTGTGATCTGGACCCGGCGCAGCCAGTCCGTGCACGGCGTGCTGATGCACTGCGCCCCCCCAGTCGTCGCCGCCACCCCCACTGAGGGCCGCCGGACTGGGAGGGGTGGGAAAGGCTGGAGTGGCGCCAACGCCGGTGGGATAAAGGGGATCAACACCACCACCCACGAAGACGAGCTGGAGGAGAGCGTGGTATAA
>TU121599
cctcctcctcctcgcccaTTCTTGTGTGGATGTACCAAATACAGTATAACTGCACGGCGGATGAGACGCTGGTATACAGGATCCTGCCCTCCACCACGAATAGCTTCTTGCTGAAGAACCTGGTGTCTGGGGTGGATTATGACCTCTGTGTGCTGGCCATCTTTGATGACCTCACCACCAACATGGCTGCCACACGGGTACTGGGCTGTGCACAGTTCAGCACCAAAGAGGACTTCCCCCTCTGCCACTCCCTGCACCACCACTTCCTGGGTGGCACCCTGACTGTCATCGTGGGGGGTGTTGTGGTGGTGACCCTGCTGGTGTTCACCGTGACTATGATGCTCAAGTACAGAGCTTCTGCCAACACTCTGGGGCCAGGCTCCACCCCCTCCCATGGCCACTCGCC

Function

symbol description
lrfn4 Predicted to be involved in regulation of postsynaptic density assembly; regulation of presynapse assembly; and synaptic membrane adhesion. Predicted to be located in plasma membrane. Predicted to be active in GABA-ergic synapse; cell surface; and glutamatergic synapse. Predicted to be integral component of postsynaptic density membrane.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat and fibronectin type-III domain-containing protein 4-like, partial

GO: NA

KEGG:

id description
K16357 LRFN4, SALM3; leucine-rich repeat and fibronectin type-III domain-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015372 True 2790 mRNA 0.65 2 8579500 8582686
TU121599 False 406 TUCP 0.58 2 8580299 8581101

Neighbor

gene id symbol gene type direction distance location
AMCG00015375 NA coding downstream 44100 8534379 ~ 8535400 (-)
AMCG00015371 NA coding downstream 50818 8526032 ~ 8528682 (-)
AMCG00015373 NA coding downstream 84640 8486551 ~ 8494860 (-)
AMCG00015367 calm1,LOC102293206,LOC102778633,LOC107396020 coding downstream 98138 8479116 ~ 8481362 (-)
AMCG00015366 NA coding downstream 161724 8413410 ~ 8417776 (-)
AMCG00015380 NA coding upstream 18641 8601327 ~ 8608308 (-)
AMCG00015379 ppp1r14b,LOC108268202 coding upstream 30570 8613256 ~ 8623716 (-)
AMCG00015387 LOC108267603,LOC106603153,LOC107583282,LOC107721660 coding upstream 85518 8668204 ~ 8671343 (-)
AMCG00015385 LOC108428058,LOC107568312,LOC107715375,LOC107669368 coding upstream 103081 8685767 ~ 8687647 (-)
AMCG00015386 NA coding upstream 150649 8733335 ~ 8734447 (-)
G97475 NA non-coding downstream 146184 8431923 ~ 8433316 (-)
G97409 gng3,LOC107559409 non-coding downstream 453036 8124268 ~ 8126464 (-)
G97395 NA non-coding downstream 510463 8068780 ~ 8069037 (-)
G97244 NA non-coding downstream 563427 8001486 ~ 8016073 (-)
G97221 NA non-coding downstream 608743 7969597 ~ 7970757 (-)
G97536 NA non-coding upstream 14049 8596735 ~ 8598299 (-)
G97561 NA non-coding upstream 28261 8610947 ~ 8611396 (-)
G97562 NA non-coding upstream 29809 8612495 ~ 8634660 (-)
G97574 NA non-coding upstream 72487 8655173 ~ 8656821 (-)
G97575 NA non-coding upstream 81389 8664075 ~ 8668051 (-)
AMCG00015374 NA other downstream 33705 8541188 ~ 8545795 (-)
G97455 mark2a,LOC107715377 other downstream 167618 8409987 ~ 8411882 (-)
AMCG00015361 NA other downstream 209469 8361614 ~ 8370031 (-)
AMCG00015348 ehd1b,LOC107718765,LOC107720605,LOC106603140,LOC107548869,LOC106930329,LOC103471421,LOC103136898 other downstream 295871 8223199 ~ 8283629 (-)
G97411 NA other downstream 445385 8131307 ~ 8134115 (-)
AMCG00015393 zgc:77262,LOC107715378,LOC107669316,LOC107568302,LOC108428054,LOC107567914,LOC108278748,LOC107700012 other upstream 206974 8789660 ~ 8794774 (-)
AMCG00015394 NA other upstream 246616 8829302 ~ 8838979 (-)
AMCG00015400 NA other upstream 371827 8954513 ~ 8960144 (-)
AMCG00015409 NA other upstream 455910 9038596 ~ 9040141 (-)
AMCG00015415 NA other upstream 569532 9152218 ~ 9156447 (-)

Expression


Co-expression Network