AMCG00015753 (LOC108275807,LOC108441536)


Basic Information

Item Value
gene id AMCG00015753
gene name LOC108275807,LOC108441536
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 19932285 ~ 19945300 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015753
CCATGGCGTTGGAAGAAAGCGAGACTATTCCCCAGTGTCCTGGAGTGAATATTTTGAGACGATGGATGATGTTGTCCACATCTTCCGAGTGTATAAGAGTGGACTGGATGGGCCCATCCTGGTGCTGCTGCATGGCGGGGGACACTCTGCCCTCTCCTGGGCTGTTTTCACTGCCTCTATGACCAGTAGAGTGACCTGCAGAGTCCTGGCAGTGGACCTTAGAGGTCATGGTGATACTCAAGTACGGAACTCTGATGATCTTTCAACGCAAACCATGTCCAGGGATGTAGCTAATGTTGTGCAAGCAATGTATGGAGAGATACCACCACCCTTGATTCTGGTGGGACACAACATGGGAGGAGCCATTGCCATACACACAGCCACCGGCACCCTGCTTCCTTCCGTGGTTGGCCTGGTGGTCATTGATGTGGTTGAAGGTAGTGCCATGGATGTTCTTCACAGCATGCAGAATTTTCTCAGGGGGAGACCGAAGACATTTAAATCCATTGACCATGCTATCGAGTGGAGcaTCAAAAGTGGACAAATCAGAAACTTAGAGTCTGCAAAAGTATCTATGGTTGGTCAACCCAGTCCTGTCAATGATGTGATTGCTGAGAGACACGAAGAATTCTATGACCTCAATTATGTCACTGATGAAGCTGACAATCTGAGATCAGAGCTACAGAGACAGAGTGTCTACAGCTGGCGGATTGACCTCTCCAAGGCAGAGAAATACTGGGATGGATGGTTTCGGGGCATCTCCAATCTTTTTCTTAGCTGCAATGTGCCAAAGCTGTTACTACTGGCAGGTATAGATCGACTGGATAGAGACCTTACTATAGGGCAAATGCAAGGGAAGTTCATGATGCAAGTTCTGCCCCCTTGTGGACACGCAGTGCATGAGGATACTCCTGATAAAGTTAGTGGC

Function

NR:

description
PREDICTED: protein phosphatase methylesterase 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015753 True 928 mRNA 0.49 11 19932285 19945300

Neighbor

gene id symbol gene type direction distance location
AMCG00015750 NA coding downstream 3758 19927382 ~ 19928527 (-)
AMCG00015749 NA coding downstream 22135 19907639 ~ 19910150 (-)
AMCG00015743 znf330,zn330,LOC107746098 coding downstream 172130 19747264 ~ 19760155 (-)
AMCG00015740 NA coding downstream 673163 19239310 ~ 19259122 (-)
AMCG00015739 NA coding downstream 777973 19132809 ~ 19154312 (-)
AMCG00015751 NA coding upstream 50869 19996169 ~ 20010622 (-)
AMCG00015755 NA coding upstream 169993 20115293 ~ 20122414 (-)
AMCG00015763 NA coding upstream 367830 20313130 ~ 20340896 (-)
AMCG00015762 NA coding upstream 396443 20341743 ~ 20363462 (-)
AMCG00015760 NA coding upstream 501800 20447100 ~ 20469761 (-)
G100297 NA non-coding downstream 6183 19925802 ~ 19926102 (-)
G100267 NA non-coding downstream 87541 19839374 ~ 19844744 (-)
G100261 rnf150,LOC107703843,LOC107746087 non-coding downstream 130060 19801976 ~ 19802225 (-)
G100257 LOC104962440 non-coding downstream 192084 19721668 ~ 19740201 (-)
G100233 NA non-coding downstream 219069 19712927 ~ 19713216 (-)
G100381 NA non-coding upstream 47940 19993240 ~ 19995630 (-)
G100385 NA non-coding upstream 150581 20095881 ~ 20100083 (-)
G100391 LOC100846954 non-coding upstream 207886 20153186 ~ 20153634 (-)
G100416 NA non-coding upstream 361751 20307051 ~ 20309103 (-)
G100468 NA non-coding upstream 831320 20776620 ~ 20776836 (-)
AMCG00015723 lsm6,LOC106610200 other downstream 1301620 18627605 ~ 18630665 (-)
G99939 NA other downstream 2094343 17837580 ~ 17837942 (-)
AMCG00015694 NA other downstream 3320841 16592228 ~ 16611444 (-)
AMCG00015691 NA other downstream 3396817 16524114 ~ 16535468 (-)
AMCG00015681 NA other downstream 3459108 16467299 ~ 16473177 (-)
AMCG00015752 NA other upstream 29656 19974956 ~ 19981557 (-)
AMCG00015761 herc3 other upstream 282067 20227367 ~ 20279644 (-)
AMCG00015800 NA other upstream 2735394 22680694 ~ 22702249 (-)
AMCG00015825 LOC106569940,LOC107700648,LOC107717728,LOC108274877,LOC107565247 other upstream 3798490 23743790 ~ 23746703 (-)
G101067 NA other upstream 5047653 24992953 ~ 25000890 (-)

Expression


Co-expression Network