AMCG00021258 (diaph2,LOC107724831)


Basic Information

Item Value
gene id AMCG00021258
gene name diaph2,LOC107724831
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13044461 ~ 13090655 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021258
ATGCTTGTAGCTGGAGGACTGAGGAACAGCAAGCACGAGTTTACACTGTCGTCACAGGAGTACGTGCATGAGCTGCGATCCGGGATCATCGACGACAAGCTTCTCAACTGCCTGGAGTCACTCAGAGTGTCCTTAACCAGCAACCCTGTCAGTTGGGTTAATAACTTTGGACATGAAGGCCTGGGACAGCTACTGGATGTCCTTGAGAAGCTTCTGGACAAAAAGCAGCAAGAACCAATTGATAAAAAGAATCAGCACAAACTTATCCAGTGTCTCAAGGCATTCATGAACAACAAGTATGGCTTGCAAAGGATCCTGGGAGATGAACGGAGCCTCTTACTTTTGGCCAGGGCTATTGACCCGAAACAAACCAGCATGATGACAGAAATCGTCAAAATTCTCTCTGCTGTCTGTATTGTTGGAGAGGAAAACACGCTTGAAAAGATCCTGGAAGCGATGACTATTGCAGCTGAGAGGAATAACAAGGAACGATTTGCAGCCATCGTGGAGGGGCTGGAAAATCACGAAGCTGCACAATTGCAGGTGGCTTGCATGCAGTTGATTAATGCCTTGGTCACATCTCCTGATGACCTGGACTTCAGGATACACCTCCGAAACGAATTCCTGAGATGTGGGCTTAAGAAAATCCTACCAGAGCTCAAAGAGACAGAGGAGCTCGATATCCAGTTGAAGGTGTTCAATGAAAACAAGGATGaggatttaattgaattatcccACCATCAGTGTGTGGATAAAGctaaagttgaagaaagtgaaCAGAAGGCTGCAGAGTTATCCAAAAAGTTTGATGAAGAGTTCACAGCCCGCCAGGAGGCCCAGGCCGAGCTCCAGAAACAGGAGGAGAAAATCAAAGAGCTGGAGGCGCAGATCCACACGCTGCAGACGCAGGTAACGAGACAGGAGCCCCCGTGGGCCCACTGA

Function

symbol description
diaph2 Predicted to enable actin binding activity. Acts upstream of or within cytoskeleton organization; gastrulation; and regulation of small GTPase mediated signal transduction. Is expressed in head. Human ortholog(s) of this gene implicated in primary ovarian insufficiency and primary ovarian insufficiency 2A. Orthologous to human DIAPH2 (diaphanous related formin 2).

NR:

description
PREDICTED: protein diaphanous homolog 2-like

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0040001 establishment of mitotic spindle localization biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0030041 actin filament polymerization biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021258 True 942 mRNA 0.48 10 13044461 13090655

Neighbor

gene id symbol gene type direction distance location
AMCG00021260 diaph2 coding downstream 128336 12910567 ~ 12916125 (-)
AMCG00021257 NA coding downstream 820153 12207338 ~ 12224308 (-)
AMCG00021252 NA coding downstream 913524 12127083 ~ 12130937 (-)
AMCG00021253 rab33a,LOC106611995,LOC107733314,LOC107666192,LOC107730569 coding downstream 917616 12122220 ~ 12126845 (-)
AMCG00021251 enox2 coding downstream 1112664 11884997 ~ 11931797 (-)
AMCG00021261 diaph2 coding upstream 95790 13186445 ~ 13192008 (-)
AMCG00021268 LOC100304549,LOC100219516,LOC106514001,LOC103353280 coding upstream 316707 13407362 ~ 13410923 (-)
AMCG00021274 LOC106604457,LOC108231309,LOC102198838,LOC103366979 coding upstream 348087 13438742 ~ 13441143 (-)
AMCG00021270 drp2,LOC106611717 coding upstream 364588 13455243 ~ 13488741 (-)
AMCG00021272 NA coding upstream 454975 13545630 ~ 13555697 (-)
G84822 NA non-coding downstream 381142 12663009 ~ 12663319 (-)
G84812 pcdh19 non-coding downstream 540959 12500240 ~ 12503502 (-)
G84785 NA non-coding downstream 841634 12198777 ~ 12202827 (-)
G84780 aifm1 non-coding downstream 901098 12141960 ~ 12143363 (-)
G84778 NA non-coding downstream 911304 12131302 ~ 12133157 (-)
G85003 NA non-coding upstream 660551 13751206 ~ 13755469 (-)
G85009 NA non-coding upstream 745932 13836587 ~ 13837073 (-)
G85012 NA non-coding upstream 767649 13858304 ~ 13862544 (-)
G85044 NA non-coding upstream 839187 13929842 ~ 13930281 (-)
G85058 NA non-coding upstream 875281 13965936 ~ 13966910 (-)
AMCG00021259 diaph2 other downstream 242875 12719864 ~ 12801586 (-)
G84814 NA other downstream 516767 12527093 ~ 12527694 (-)
AMCG00021249 NA other downstream 943607 12093477 ~ 12100854 (-)
AMCG00021153 NA other downstream 5921970 7115420 ~ 7122491 (-)
G83864 NA other downstream 6497884 6544492 ~ 6546577 (-)
G84952 NA other upstream 536680 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 779284 13869939 ~ 13917868 (-)
AMCG00021302 NA other upstream 857652 13948307 ~ 13951044 (-)
G85115 NA other upstream 959319 14049974 ~ 14051897 (-)
AMCG00021304 NA other upstream 967263 14057918 ~ 14071325 (-)

Expression


Co-expression Network