AMCG00021268 (LOC100304549,LOC100219516,LOC106514001,LOC103353280)


Basic Information

Item Value
gene id AMCG00021268
gene name LOC100304549,LOC100219516,LOC106514001,LOC103353280
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13407362 ~ 13410923 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021268
ATGGTGAACGTGCCGAAAACCCGCAGGACCTACTGCAAAAAGTGCAAGAAGCATCAGCCCCACAAAGTCACCCAGTACAAGAAGGGCAAGGACTCCCTGTACGCTCAGGGTAAGAGGAGATACGACAGAAAGCAGAGTGGTTATGGTGGTCAGACGAAGCCTATTTTCCGCAAAAAGGCTAAGACTACAAAGAAGATTGTGCTGAGACTGGAGTGTGTGGAGCCCAACTGCAGGTCCAAGAGAATGCTGGCCATCAAGAGATGCAAGCACTTTGAACTGGGAGGAGACAAGAAGAGAAAGGGCCAGGTCATCCAGTTCTAAGCagcatctttttgtttttttgtggaaaTTCCATCTTTGTCAATAAAGAAATGATAAGATCAAGAGATGTTAACTTTGTGAACATATGCTATATTGGGAAGATCTAACAAAGAggtttaaaatctaaaatcattCTGAAATGTCACGAGAAACTCACAATTGGttacaaaaatctaatttattttagaattatgATGCACATTTTGGCACACACAACTTACATTTAGCCCTGAgatatcagttttaaaatgaagtcTTATTTCCCTTTACCAGTTTTAAAAGATTTTCTACTGGTGAAACCACATGGCTAATTTAACAGGAATGCATAAATCACTGGAACATTTAGCAAATCTATTTGAATACCTttttaaccaaacaaaaaagctCAGGTAAAATGTCTTGTGCTTCTTTAAGATTATAAAGCAGTGCTTGGATTCTTAATCTCGTATAATGCATGGTGCCAGACAAAGGAACTAGATAAAACCCTTATACCATTGTTTAAAGTGTAAGCATATTTAAACCTATATGCAGCACAGATTAAGAGTACATTTCAGGGTCAGGTTTAATGCAAGGTTAGGGTTCATGCTTGCTGTTAATGCATGAGAATTGTGGAAAGGGTGAGGGTTAATTTGGGCAGAAAACTGCAgacagtacattaaaaaatgtgtaattagtTTGGTTGTAGCTGGGTAACATTTAGTTCACCCTAGAGCAGTGGCTCTCAAACCTGttctggagtaccacctaccctgctgctttttgttcaaACTGAGCTTTgttaattgaacacttaattgaagtaatttgattaaattgtgtaactgatcaaGTTGGTTCTTTGAGActataatttccttatacaattctataattaaaaacccctactgttacaaataatgaaaggctctgatttaggaaatgagttcaattaagtaattgagagcttagtgggaacaaaacccagcagcgtaggtggtactccaggacaggt

Function

NR:

description
60S ribosomal protein L36a

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0006412 translation biological_process
GO:0009790 embryo development biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02929 RP-L44e, RPL44; large subunit ribosomal protein L44e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021268 True 1312 mRNA 0.38 5 13407362 13410923

Neighbor

gene id symbol gene type direction distance location
AMCG00021261 diaph2 coding downstream 215354 13186445 ~ 13192008 (-)
AMCG00021258 diaph2,LOC107724831 coding downstream 316707 13044461 ~ 13090655 (-)
AMCG00021260 diaph2 coding downstream 491237 12910567 ~ 12916125 (-)
AMCG00021257 NA coding downstream 1183054 12207338 ~ 12224308 (-)
AMCG00021252 NA coding downstream 1276425 12127083 ~ 12130937 (-)
AMCG00021274 LOC106604457,LOC108231309,LOC102198838,LOC103366979 coding upstream 27819 13438742 ~ 13441143 (-)
AMCG00021270 drp2,LOC106611717 coding upstream 44320 13455243 ~ 13488741 (-)
AMCG00021272 NA coding upstream 134707 13545630 ~ 13555697 (-)
AMCG00021269 tmem35,tmem35a,LOC107740187,LOC107680989,LOC107724834 coding upstream 146233 13557156 ~ 13561413 (-)
AMCG00021273 NA coding upstream 155435 13566358 ~ 13567828 (-)
G84822 NA non-coding downstream 744043 12663009 ~ 12663319 (-)
G84812 pcdh19 non-coding downstream 903860 12500240 ~ 12503502 (-)
G84785 NA non-coding downstream 1204535 12198777 ~ 12202827 (-)
G84780 aifm1 non-coding downstream 1263999 12141960 ~ 12143363 (-)
G84778 NA non-coding downstream 1274205 12131302 ~ 12133157 (-)
G85003 NA non-coding upstream 340283 13751206 ~ 13755469 (-)
G85009 NA non-coding upstream 425664 13836587 ~ 13837073 (-)
G85012 NA non-coding upstream 447381 13858304 ~ 13862544 (-)
G85044 NA non-coding upstream 518919 13929842 ~ 13930281 (-)
G85058 NA non-coding upstream 555013 13965936 ~ 13966910 (-)
AMCG00021259 diaph2 other downstream 605776 12719864 ~ 12801586 (-)
G84814 NA other downstream 879668 12527093 ~ 12527694 (-)
AMCG00021249 NA other downstream 1306508 12093477 ~ 12100854 (-)
AMCG00021153 NA other downstream 6284871 7115420 ~ 7122491 (-)
G83864 NA other downstream 6860785 6544492 ~ 6546577 (-)
G84952 NA other upstream 216412 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 459016 13869939 ~ 13917868 (-)
AMCG00021302 NA other upstream 537384 13948307 ~ 13951044 (-)
G85115 NA other upstream 639051 14049974 ~ 14051897 (-)
AMCG00021304 NA other upstream 646995 14057918 ~ 14071325 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030026 rpl36a coding NC_007116.7 CM002889.2 22510639 ~ 22515186 (+)
striped catfish (Pangasianodon hypophthalmus) rpl36a LOC100304549,LOC100219516,LOC106514001,LOC103353280,LOC100690460 misc NC_047621.1 CM018567.1 17281989 ~ 17289481 (+)