XLOC_006237 (BX936305.2)


Basic Information

Item Value
gene id XLOC_006237
gene name BX936305.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 45942158 ~ 45958468 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012232
ttcagatggaggagGGCAGGAACACAGAGGATGCGATGTATATCATATATCAAAGtagacacaaataaaaaatacgcACATATGATGGGTATAATCCTTATATCATGACGAGGGCCGAGTTTTCCTctgaagtaaaatatatttgcctgccATTGAGGCAGCCGCAGTAGATAGCTACTACagtatcatagatatatacactagatatcgcatagggaccctgagcatgcgtctatagcgccgccacatttgtacagtgctcacaggacaaatgtcattcaacaccACTAGTcaagtgttattacgtgaagatgctggactttagcgctgtcgtGGACCGTTCATGTAAAAACTTGCAACCTTTCAGAACAAAAGTGTGTCTTGCGGCTCCTCCGGGCCCCTGAGAGCCCAGTGACCTCTGAGGCGGCTTCAAAGAGAGCGGCAGGGGGGCGGAGTCAGACTCGACGCATCACAATGACACCCCACCCACTCTCTGCCCTCACTTTCCTCAAGTATGCGAATATCAATGACCGCTGTCCTCTCTCTGTGACCTCTCTATCACTTCACCTCTGGTACTTTAATTCTTTCAGCTCGTCACTGCAGATAATTAAACTggtattttaaagggatagttcaaccaaaattgCAAAATCGGTCATCTTTTATTCAAACTTCACTTTtgattattttgaatatttttctgcTGAACATAAAAGATATTTTGAGGGCTTTAAACTctaaaccattgacatccatagtattttttccagtttattttataataataataataataataataataataataataataataataataataattttt
>TCONS_00012233
CCGCGAGACCTTCCCTGTTCTCGTCCTGACAACACGTTTATTTTCTTTAGGAACAAAAGTGTGTCTTGCGGCTCCTCCGGGCCCCTGAGAGCCCAGTGACCTCTGAGGCGGCTTCAAAGAGAGCGGCAGGGGGGCGGAGTCAGACTCGACGCATCACAATGACACCCCACCCACTCTCTGCCCTCACTTTCCTCAACTTTTCTGCAAAGATTTGGACTCTTCTTCAGGATAAAAGCGGCGGATGGTGAATCTGCAGTTTGGGCTGTAATTTATGAGGCCGCAGCAGCACGAATGAAATGAAGCTTTTACAACAGACGCCTGCTGACACACTTTTAGC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117440

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012232 False 835 lncRNA 0.40 2 45942158 45947458
TCONS_00012233 True 337 lncRNA 0.53 3 45946940 45958468

Neighbor

gene id symbol gene type direction distance location
XLOC_006236 NA coding upstream 10622 45931157 ~ 45931536 (+)
XLOC_006235 NA coding upstream 65188 45871425 ~ 45876970 (+)
XLOC_006234 BX914200.1 coding upstream 98219 45840427 ~ 45843939 (+)
XLOC_006233 si:ch211-62a1.3 coding upstream 167343 45709380 ~ 45774815 (+)
XLOC_006232 ldlrap1b coding upstream 296991 45582391 ~ 45645167 (+)
XLOC_006238 olig4 coding downstream 8711 45967179 ~ 45968256 (+)
XLOC_006239 bsdc1 coding downstream 21695 45980163 ~ 46000113 (+)
XLOC_006240 marcksl1a coding downstream 219010 46177478 ~ 46180510 (+)
XLOC_006241 CABZ01022272.1 coding downstream 269245 46227713 ~ 46227829 (+)
XLOC_006242 tmem63ba coding downstream 760050 46718518 ~ 46796020 (+)
XLOC_006228 NA non-coding upstream 469475 45455745 ~ 45472683 (+)
XLOC_006225 NA non-coding upstream 650404 45271632 ~ 45291754 (+)
XLOC_006246 NA non-coding downstream 1028279 46986747 ~ 46987182 (+)
XLOC_006248 CR847786.1 non-coding downstream 1091444 47049912 ~ 47050026 (+)
XLOC_006249 NA non-coding downstream 1230666 47189134 ~ 47453908 (+)
XLOC_006250 NA non-coding downstream 1268768 47227236 ~ 47229296 (+)

Expression


Co-expression Network