LOC122353057


Basic Information

Item Value
gene id LOC122353057
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 10947032 ~ 10950467 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251956.1
aggatttgacaaatttgaatactttttttgaaggttttttatacattaatatatgtacatttctACATGATTAACCCTTTCCTGAAGTGGATCAGTAGactaaaaaaacttttgtgtTCTCTCAgcaattgctagtaaatttcacgcttaattaaattacagaacaTAACTTTAACACAGAATATATTGAACATAATTCCGGAAATTGTAATGCATACTTCAATAATCTTTGTTTTGTGTACgacatcaattttttttttacagtgaatatTTGGGGGTGGAGCGAAATGTTTGAAAACCCCTGCCCTAAAAAAGCTTAGTGACAGAGCTTAGGGAAACATTTCAAGCCTTATAATTAACTTAACTCCATGCGATACTAACTTTACAGCGGATTTGTGTAGGTCCAACTGTTTGTCCTTTGACTACAAAACGCGTTTTTGCGCCCGTATTGTGTCAGACATAAGTGTTGATGTGTTTATTGGTAGGAACTGCAGAGGAATGACAGAGTGAGCTGCCACAGAGGAATCTGCAGAGGTCAAAGTCTGTCTGCGATCCATGGGCTGTTTCTGCTGACTCCTGCTTTTCAATGGTGCTACTTACAGACTCCTCAGACGGCAGAAAACACCGCTGAAAGGGAGGGGGAGAGGCGCCTTTCATTAACTCTCTATTcatattgaatttattaatctCATGCTGTTTCTGCAGCTTAACTAAAAGAAGCCGCGATACTGCCGCTTTTCATCCATCTGCTCGTGGAGAGAAGGGAAGGGAGCGGGTACGAGAGGGAGAGAGGCGACATGATTTCTAACAGCGCTGAAACGGCAATAGACTGCAGAGAGAGGGAAAGTGTGTCAGATTATTTAGCGGCAGGGATGTTGGGTTGTAGTTGTGTGTCGCTGGGAGAGGCAGCAGCCCTGCAGAACACCCCTCCCCACGTCAGGTGCACAACAAAAGCATCtgtcatgtctgcatttgtgtaCAGGGGAATGTTCCTGCTAATCTCCTGTGTGTTCAACAGTGTTTTCCAGTCTTGCAGCCCTGGCCTCTACTGTATACCACAGCAGTACCACAAAAGCAATCCTGGCTAAGTGATAGATCCAGACggaatctggaaaaaaaaaaaaaagttttttgatcTGTGGAATTCTGCAGAACAACGTGTCAAAGATTGCTGATACACTGCCCTCTAATTTCTGACTGTATGCATACGAGTCAATGAAATTATGCTCATCTTGTGTCCCTTCCGTTCAATACTTGTTTCGTCATCagatcagatttggagaaatttagcatgaCTTGCTGACCAATGGATCccctggagtgaatgggtgccgtcagaatgagagtccaaacgacTGATAAATACATCAGAACAATCTAAGAGTAACCCACACAGCTCCGCTCCATcatcttgtgaagcaaaaggctTTTGGTGTTCAAATTCTGCAGAATTCTGATAATAGACAGACCTCCTAACAACTGGCTAAAAACTCCCAGTGTCAAGCAACAAAAGAGAAGGCTTTCCCAGAGTTCAGCTGAAAAGGTATTGACTGACACAATCTTACACGGTTCAGGGGAGGTTTATGGTCGGAGGCAGCTTCCGTCTGTGGTCAGCAGGTCCTCtctgcaaacaaaaacagcactgGGCATTTTCAGAGATGAGAGGGGCAGAGATGCTTGTTCAATCCTTCAGTGTTTCTAAACAAGGACATCCAGCGGAGAACTCAGCCAGGGCCACAATTACCCCCTAAATGACCCATTCAGTGGTTTGGAGCTCTTACCAAAATAACCGTGAACCCTTACTGTGTACTCTGGTTGAGCTTGAAGAGCTAACAGGGTATTAGACTGATTGTAGTGCTGGGAAGAGCAGAGAGGTCCTCAAAGACCCTTGTTCAGGGTGTCTCCGGTGACTGATCCACACCTGCAGTGATGGGAAAGAGAGCAGCTGAGATCTGGAAGCAGGAACCTTCATCAAAAATAATGATAACTCACTATGATGAAGCGTTTGACCAAATGATGGaagttaataaaattattatcatgacatttaatttaaaggtaAACTTATTATTCACAAAATGAAAGAAGTCTCCTTTTATTACCAAAGCTGCACTTATATAATCAAAACATAACGTAAAATATCGTAAAATTATATTGtttgctgatttgatgctcaggaaacatttactATCACTCAAGTGTTGAAAACTGAttttgcagcttaatatttttttggaaacggcgatgcattcaaaagtttggagcaagatttaaatatatatgtctgtAAGTGTGCATTAGATAAAAGcaacagtaaagatatttatattgttCAAAAAATGAGTATTCACAATCTTGCTTCGTGTAATTTGAAGTTGATATCTAGCGTGTTTGTGTGAtagtaaatgcatatatttttatgtatgcacTGAAAGAAGCAGTCAGACTGCTCCTGTATTTACACACGCAATGCCCTTTTTGAACTTCTGAATCCCTCCTTGACTCCACTTTTGCTGAAAGGAGCAGGAAGGATATCACCACTTAGCCTGTGTAAACAGCAGGTCTGCTGTTGAACTGTGGCCCTGCAACTCCTATTGACACACATTCCACTGACCACTGATGAGTCCCGGGTCTGCTAGCGCGTGTCTTATGTGCCCCGCGTGACAACgtgtgaaagtgtgtttgtgtgtgtgtgtgtgtgcgtgcgtgtgggTATCAGACAAACAGCGAAGGAGGTGGCGAATCAGCTTTGCAGAAAAGACAGTCTAAATGCACTGGCATGCTTATTGATAAAGATTTGCGTAAAAATAATTGACatgaaatagtaataaaatatcgTTAAAAATTACGATAAAAATGAACttcaacattataaatatatgcaaaataataaatgaataatcaacttttttttaataattaggtatgttgaaaaaaagttatgtaaTGGACAAACAATGGGAATTTGCCATCTATTCTATGTGAGACATGACCTTGTAAATAAACGCAGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251956.1 True 3013 lncRNA 0.40 3 10947032 10950467

Neighbor

gene id symbol gene type direction distance location
med13a med13,LOC107693951,LOC107744626,LOC107699258,LOC107747042,LOC107548827 coding downstream 1317 10892793 ~ 10945715 (-)
ints2 ints2,LOC107744627,LOC107699256,LOC107747027,LOC107693886 coding downstream 55268 10873812 ~ 10891764 (-)
auts2a auts2,LOC107693947 coding downstream 184135 10481653 ~ 10762897 (-)
cnih2 cnih2,LOC100706298,LOC107718764,LOC107091387 coding downstream 548808 10390116 ~ 10398224 (-)
LOC122352948 LOC107693944,LOC107548866,LOC107720609 coding downstream 562384 10383532 ~ 10384648 (-)
cltca cltca,cltc,LOC107548879,LOC107744621 coding upstream 95940 11046407 ~ 11079418 (-)
LOC122352515 ddx56,LOC107733287,LOC107751685 coding upstream 131172 11081639 ~ 11138691 (-)
btg3 btg3,LOC107699262,LOC107744619,LOC107747057,LOC107693957,LOC107548882,LOC107578493 coding upstream 194918 11145385 ~ 11149832 (-)
LOC122352533 LOC107747056,LOC107693900,LOC107548843,LOC107548828 coding upstream 200644 11151111 ~ 11158734 (-)
LOC122352716 LOC107576779 coding upstream 217658 11168125 ~ 11172314 (-)
G76618 NA non-coding downstream 74945 10871806 ~ 10872087 (-)
G76489 NA non-coding downstream 486633 10436192 ~ 10460399 (-)
G76493 NA non-coding downstream 490520 10455591 ~ 10456512 (-)
G76488 NA non-coding downstream 501876 10424615 ~ 10445156 (-)
G76458 NA non-coding downstream 535194 10403957 ~ 10411838 (-)
G76622 NA non-coding upstream 9469 10959936 ~ 10987235 (-)
G76632 NA non-coding upstream 43751 10994218 ~ 10994426 (-)
LOC122352521 NA non-coding upstream 75602 11026069 ~ 11044853 (-)
LOC122352520 NA non-coding upstream 85225 11035692 ~ 11038800 (-)
G76627 NA non-coding upstream 137119 11087586 ~ 11091061 (-)
G76498 NA other downstream 466843 10478059 ~ 10480189 (-)
G76438 NA other downstream 563723 10380096 ~ 10383309 (-)
fgf13b fgf13,fgf13b,LOC107555168,LOC107718748,LOC107720625,LOC107701151,LOC107548853,LOC107693932,LOC108444526 other downstream 663367 10267354 ~ 10283665 (-)
LOC122353179 LOC107693906,LOC107720543,LOC107555189,LOC107701125,LOC107718772 other downstream 1321627 9572372 ~ 9625405 (-)
cd209 NA other downstream 1436602 9489330 ~ 9510430 (-)
rps6kb1a rps6kb1a,LOC107747022,LOC107548877,LOC107744622,LOC107699259,LOC107693887 other upstream 22414 10972881 ~ 10983738 (-)
G76625 NA other upstream 66643 11017110 ~ 11038731 (-)
LOC122352715 LOC107693960,LOC107747020,LOC107744618,LOC107699265 other upstream 226102 11176569 ~ 11207252 (-)
ccdc83 NA other upstream 554843 11505310 ~ 11584960 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other upstream 1728523 12678990 ~ 12769417 (-)

Expression


Co-expression Network