G80408 (pik3ca,LOC107685965,LOC107574159,LOC107551780)


Basic Information

Item Value
gene id G80408
gene name pik3ca,LOC107685965,LOC107574159,LOC107551780
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 9526822 ~ 9527237 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU118950
GAAAACAGCTTCAAGAAAAACGCTAGTGCAGAAAGGTcatgcaattattaaaaagaaacacaccAGCAGCTTCCTGTTCTTTCACAATGTGAAACTTCTGCTAAGGTACCAAACATCTCCCAAGCTTTGTGTAATAAAAGACTTACAGAACGCAAAGAGACTTCAGCTACCCACCTTGTCAATGTCCCGAATATTCACATTGACATATGTGGCGCAGAGAACCCGTATCCTTAGTGTACTGTTAATGGTCCAGAGGGATTTGGTGGAGGCCTCTCCGTTCATGTAAGGCGTGGCGGTGGAGATCCGGCGGGCGTAGGAGGGCATGGTGAAGTTGTCCATAGGCAGCTGAGAGTAAAGACTGTCCTTGGACATAAGCATGAGGTTTGGCAACCGACCAAGCATAATGCAACTCCGTA

Function

symbol description
pik3ca Predicted to enable phosphatidylinositol-3,4-bisphosphate 5-kinase activity and phosphatidylinositol-4,5-bisphosphate 3-kinase activity. Acts upstream of or within regulation of collateral sprouting in absence of injury. Is expressed in eye and male organism. Human ortholog(s) of this gene implicated in several diseases, including CLOVES syndrome; Cowden syndrome; breast cancer (multiple); cutaneous Paget's disease; and gastrointestinal system cancer (multiple). Orthologous to human PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118950 True 416 lncRNA 0.46 1 9526822 9527237

Neighbor

gene id symbol gene type direction distance location
zmat3 zmat3,LOC107715805,LOC107685963,LOC107718246,LOC107677493,LOC107581711 coding downstream 5061 9508358 ~ 9521761 (-)
si:dkey-202e22.2 si:dkey-202e22.2,LOC107715802,LOC107574832,LOC107677483,LOC107718205,LOC107686004,LOC107551796 coding downstream 93846 9426276 ~ 9432976 (-)
slc38a3a slc38a3,LOC107715801,LOC107685967,LOC107718202,LOC107551777,LOC105909818,LOC107677487 coding downstream 118728 9370377 ~ 9408094 (-)
gnai2a gnai2a,gnai2,LOC107551795,LOC107685968,LOC107677503,LOC107723915,LOC105909893,LOC106517997 coding downstream 158934 9317024 ~ 9367888 (-)
inka1a LOC107677492,LOC107715799,LOC107686008,LOC107718245,LOC107578626,LOC107551787,LOC107582130 coding downstream 217237 9306658 ~ 9309585 (-)
fam43a fam43a,LOC107715807,LOC107574059,LOC107677513,LOC107685960,LOC107718209,LOC107551800 coding upstream 114312 9641549 ~ 9643717 (-)
spoplb spoplb,LOC107551807,LOC108412981,LOC107685952,LOC103032629,LOC108270802,LOC107718234,LOC105911847,LOC107573035 coding upstream 264806 9792043 ~ 9801222 (-)
nkpd1 LOC107686002,LOC107556520,LOC107718248 coding upstream 494724 10021961 ~ 10027236 (-)
trnaq-cug_19 NA coding upstream 731958 10259195 ~ 10259266 (-)
LOC122354381 megf11,LOC107596974,LOC107686294,LOC107672222,LOC107583869 coding upstream 739522 10266759 ~ 10305672 (-)
G80407 pik3ca,LOC107551780,LOC107685965,LOC107574159 non-coding downstream 350 9526142 ~ 9526472 (-)
G80406 NA non-coding downstream 1544 9525068 ~ 9525278 (-)
G80405 pik3ca,LOC107551780,LOC104933269,LOC100704479,LOC101066166 non-coding downstream 2398 9524051 ~ 9524424 (-)
G80400 NA non-coding downstream 28789 9497448 ~ 9498033 (-)
G80328 NA non-coding downstream 100600 9424948 ~ 9426222 (-)
G80409 NA non-coding upstream 2346 9529583 ~ 9530206 (-)
G80410 NA non-coding upstream 3119 9530356 ~ 9530761 (-)
G80411 NA non-coding upstream 5330 9532567 ~ 9533764 (-)
G80412 pik3ca,LOC107685965,LOC107551780,LOC107574159 non-coding upstream 8360 9535597 ~ 9540119 (-)
G80426 NA non-coding upstream 59652 9586889 ~ 9587166 (-)
LOC122353984 NA other downstream 826065 8696450 ~ 8700757 (-)
LOC122353980 NA other downstream 859022 8553416 ~ 8667800 (-)
LOC122354573 NA other downstream 988278 8532773 ~ 8538544 (-)
LOC122354572 NA other downstream 1006802 8508659 ~ 8520020 (-)
LOC122353694 NA other downstream 1029537 8491771 ~ 8497285 (-)
thsd7bb NA other upstream 286385 9813622 ~ 9866553 (-)
cntnap5l cntnap5l,LOC107687751,LOC107581667,LOC107685949,LOC107715775,LOC107718238,LOC107572029 other upstream 368479 9895716 ~ 9961124 (-)
G80581 dennd4a,LOC107596978,LOC107686292,LOC107672237,LOC107583773 other upstream 718365 10245602 ~ 10254848 (-)
LOC122354283 mfn2,LOC107710790,LOC107748965,LOC107602467,LOC107698839,LOC107678429,LOC107701405,LOC107552408,LOC107661155,LOC107558363,LOC107706807 other upstream 1223960 10751197 ~ 10758842 (-)
LOC122353594 rfc4 other upstream 1235254 10762491 ~ 10765837 (-)

Expression


Co-expression Network