LOC122358587


Basic Information

Item Value
gene id LOC122358587
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 6669847 ~ 6721194 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258474.1
ATGGAGGAAAGTACAGCTGCAGAGCACGAAGAGGAGAAGATATTACACAGATTACAACCAAAACCCAGAGTGAACATTAAACCTGATCAACATGTGTTCAGAGGAGAAACAGTCACTCTCAGATGTGACATATATGATAAAGGAGTCACTAGCTGGAGATACAGCTGGTATAAAGATAATTCAAGAAGAGTTTTCAGTGATGGACAGGAACACACATTCAGTTCTGTTACTGAGTCTGACTCAGGTGAATACTCCTGTGAAGGATCAGAGATCAGAGGATCACGCCGGTCACACACGAGTGATAAAGTTACTCTGAAAGTATCAGATCTTCCTAAACTGACTCTGACAGCTGATCCTCAGAGTCCAGTGTTCACCGGAGACTCAGTTACTCTGAGATGTGAGGGGATTCAGTCACAGAATGGATGGGAGTTTCTCTGGAGAAAAGACTCAAACCCTGAATCTACTGAAGATCAAACTAAAACAATCAAACCTGAGAAAGTCTCTGATGGAGGAAAGTACAGCTGCAGAGCacgaagaagaggaggaagataTTACACAGATTACAGTAAACCTGTAACAGTAACAGTATACGAAAGACCAAAACCCAGAGTGAACATTAAACCTGATCAACATGTGTTCAGAGGAGAAACAGTCACTCTCAGATGTGACATATATGATAAAGGAGTCACTAGCTGGAGATACAGCTGGTATAAAGATAATTCAAGAAGAGTTTTCAGTGATGGACAGGAACACACATTCAGTTCTGTTACTGAGTCTGACTCAGGTGAATACTCCTGTGAAGGATCAGAGATCAGAGGATCACGCCGGTCACACACGAGTGATAAAGTTACTCTGAAAGTATCAGATCTTCCTAAACTGACTCTGACAGCTGATCCTCAGAGTCCAGTGTTCACCGGAGACTCAGTTACTCTGAGATGTGAGGGGATTCAGTCACAGAATGGATGGGAGTTTCTCTGGAGAAAAGACTCAAACCCTGAATCTACTGAAGATCAAACTAAAACAATCAAACCTGAGAAAGTCTCTGATGGAGGAAAGTACAGCTGCAGAGCacgaagaagaggaggaagataTTACACAGTTTACAGTAAACCTGTAACAGTAACAGTATACGAAAGACCAAAACCCAGAGTGAACATTAAACCTGATCAACATGTGTTCAGAGGAGAAACAGTCACTCTCAGATGTGACATATATGATGAAGGAGTCACTAGCTGGAGATACAGCTGGTATAAAGATAATTCAAGAAGAGTTTTCAGTGATGGACAGGAACACACATTCAGTTCTGTTACTGAGTCTGTCTCAGGTGAATACTCCTGTGAAGGATCAGAGATCAGAGGATCACGCCGGTCACACACGAGTGATAAAGTTACTCTGAAAGTATCAGATCCCAAATCAGTTTTAAGTGTTTCTCCACAGAAGTGGTTGACTGAAGGAGAtccagtgactctgatctgtgaGGTTCACAACTTCTCTACAGGCTGGACGTTCAGCTGGTTCACTTTAACTCAATCACCAGGTGGTTATCATCTGctctcagacagcagcagaggagcaggaggaagaTACAGGATCAGTTCTGCTGCTGTAGATCACACAGGAGTTTATGTgtgcagagcagagagagagaaatcatcTTATAAAACACAGTACAGCAACACTCAGCTGCTGTGGGTCACCGGTGTTTCTGCTCCAGTCTCTCTGAGGGTCAGTCCCAGCAGAACTCAACACTTCAgatctgactctctctctctgagctgtgaAGACCAGAGTAACTCTAATGTATGGAGAGTGAGAAGATACACAGACCTCTGGGGGCTGAAGGATTGTTCATCAATACCTCGAGGATCACACACAGGATCTACATGTACAATCAGTTACGTCTATACATCACTCACTGGAGTGTACTGGTGTGAGTCTGAATCTGGAGAGAAACATCATCCTGTTAATATCACTGTACACTCTGAAGTGATTCTGGAGAGTCCTGTTCATCCTGTGACTGAAGGAGATAGTCTGACTCTACACTGTTTATATCGATACACTCCATCAAACCTCAGAGCTGATTTCTATAAAGATGGATCACTCATCCAGAATCAAACTACAGAGATGATCATCTCTCCTGTCTCAAAGTCACACGAGGGTTTCTACTCCTGCAAACACCCAGAGAGAGGAGAGTCACCCAAGAGCTGGATCTCAGTCAGACGCTCAGTATCTGAGGATCTCAAACCCATGATAATTGGAGTAACAGCAGGACTGACTGCAGTCTTCATCGTTGTCTTCTTGGTTCTGCTCTGGTGCTACAGAAACAACAAagGTGTTAAATCTCCTTCTAATGTGAATCAAACATCAGACCAGAACCAGAGTGACGCCGGATACAAGACACTGCTGACTGGAACTGCTCATGTGTATGACTCTGTTGATGTTCTTGTTAATAATGACCGTGTTAGTGCACCTGCTGAACTCACATATGCTGAGATTGAACTGAAAtctaaaacaaagcagaagaaaaagaaagaaaataaaggtgAACAAAAACTATGCTCTTATGATCATAACAGTAGCTAA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0004175 endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258474.1 True 2583 mRNA 0.43 14 6669847 6721194

Neighbor

gene id symbol gene type direction distance location
LOC122358559 NA coding downstream 37935 6630756 ~ 6631912 (-)
LOC122359418 NA coding downstream 65634 6582796 ~ 6604213 (-)
LOC122359416 NA coding downstream 121612 6542868 ~ 6548235 (-)
LOC122358910 cdkl1,LOC107551271,LOC107680089,LOC107598661,LOC108424097,LOC105890602,LOC107703957 coding downstream 257152 6397789 ~ 6412695 (-)
zmp:0000001236 maml2,LOC107598561,LOC107744020,LOC107714095,LOC107555004 coding downstream 275627 6349486 ~ 6394220 (-)
LOC122358733 LOC107598566,LOC107744048,LOC107680082,LOC107703963,LOC107551267,LOC100333734,LOC108424028 coding upstream 78182 6799376 ~ 7023464 (-)
LOC122358728 NA coding upstream 120751 6841945 ~ 6859791 (-)
LOC122358727 NA coding upstream 264136 6985330 ~ 6994184 (-)
LOC122358868 LOC107703955,LOC107744030,LOC107598617 coding upstream 341506 7062700 ~ 7074258 (-)
taf15 taf15,LOC107703972,LOC107728230,LOC107598573 coding upstream 398868 7120062 ~ 7126137 (-)
G104258 LOC107551247,LOC107599327,LOC107599328 non-coding downstream 54308 6614294 ~ 6615539 (-)
G104249 NA non-coding downstream 180346 6488798 ~ 6489501 (-)
LOC122358561 NA non-coding downstream 182881 6485812 ~ 6486966 (-)
G104240 NA non-coding downstream 204986 6464364 ~ 6464861 (-)
G104236 NA non-coding downstream 241710 6425929 ~ 6428137 (-)
G104294 NA non-coding upstream 85098 6806292 ~ 7036830 (-)
LOC122358745 NA non-coding upstream 120142 6841336 ~ 6841692 (-)
LOC122358744 NA non-coding upstream 198716 6919910 ~ 6920260 (-)
G104314 LOC107680077,LOC107551265,LOC107703961,LOC107744046,LOC107598567 non-coding upstream 316532 7037726 ~ 7039192 (-)
G104252 cldne,LOC107680074,LOC107703976,LOC107598571,LOC107551262 non-coding upstream 321200 7042394 ~ 7098067 (-)
G104011 NA other downstream 523330 6146173 ~ 6146517 (-)
LOC122359408 LOC107744036,LOC107704290,LOC107562996,LOC107680065 other downstream 868766 5794803 ~ 5801081 (-)
pgm2l1 pgm2l1,LOC107684026,LOC107677044,LOC107569072 other downstream 920096 5737456 ~ 5749751 (-)
G103825 NA other downstream 1230900 5438048 ~ 5438947 (-)
LOC122359119 NA other downstream 1960767 4707814 ~ 4709080 (-)
mmp28 mmp28 other upstream 390062 7111256 ~ 7119286 (-)
G104603 LOC107703035,LOC107750119,LOC107551239 other upstream 848652 7569846 ~ 7572090 (-)
G104628 NA other upstream 918450 7639644 ~ 7640339 (-)
G104695 LOC107750114,LOC107701289,LOC107702996,LOC107720420,LOC107570341 other upstream 1236642 7957836 ~ 7958231 (-)
nipsnap2 gbas,LOC106581053 other upstream 1323628 8044822 ~ 8050710 (-)

Expression


Co-expression Network