LOC122358561


Basic Information

Item Value
gene id LOC122358561
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 6485812 ~ 6486966 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252629.1
GACAGTGAGTCTTCAGAACACATGTATGCTGAGATCGAGCTGAAATCTACAAatgaacagaagaaaaataaggaaaacaaagAGAATAAAAGTGAGAGTTCTGAATGCTTTTACTCTAAACTCACACTGAAAACAGATCAAGgTGCTGGATCTAGTGATGTGACGTATGTTGAGGTGGATTAAAAATATCAAGAGGAGAAACCTTCTGGTTACAAAATTTGGTGGATGATCTATCATCTacaattgaatttttattatatatatgtatataaatatttagcatgtgatagaaaaaatatattataatgatttagtATTGCATATTGGTTTATACAGTAAAAGGGTGatcatttattgtgtgtgtgttatgtccatttgaacatattttgttgatcatgcaaaaaaaaaaaagtgagaaagaaaaacaacacaatatatGTTTAGCTAAGTCTATTTTGTGCTATATTGagatatttaatgttatatttctGTTAAGGCTGTGACTGTAATTTAGTTatagctgtgtttgtgtttgtgtcttttacTCAGATGCTCTCAAAAATACTTAAAgtgcaaaataatgtaaatatagagaaaatcacctttaaacttgtccaaatgaagttcctAGCAGTtgatattactaattaaaaattatgtttggaGATATTTGCAgcaggaaatttacaaaataacttCATGGAGCTTGATCGTTCCTTAATATCCTAAAGATCTGGGCATAAAGGAAACTGCATTTTGgactatttctacaaatatacctgttcTGCTCATGACTGCTCCTGCGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252629.1 True 807 lncRNA 0.31 3 6485812 6486966

Neighbor

gene id symbol gene type direction distance location
LOC122358910 cdkl1,LOC107551271,LOC107680089,LOC107598661,LOC108424097,LOC105890602,LOC107703957 coding downstream 73117 6397789 ~ 6412695 (-)
zmp:0000001236 maml2,LOC107598561,LOC107744020,LOC107714095,LOC107555004 coding downstream 91592 6349486 ~ 6394220 (-)
LOC122359410 abcg1,LOC107684024,LOC107561305,LOC107723828,LOC108426925,LOC107755138,LOC107677096,LOC108277612 coding downstream 230257 6242921 ~ 6255555 (-)
lipt2 lipt2,LOC107677087,LOC107684031,LOC107720748 coding downstream 321113 6162754 ~ 6164699 (-)
eif4h eif4h,LOC107704308,LOC107744028 coding downstream 488882 5986535 ~ 5996930 (-)
LOC122359416 NA coding upstream 55902 6542868 ~ 6548235 (-)
LOC122359418 NA coding upstream 95830 6582796 ~ 6604213 (-)
LOC122358559 NA coding upstream 143790 6630756 ~ 6631912 (-)
LOC122358587 NA coding upstream 182881 6669847 ~ 6721194 (-)
LOC122358733 LOC107598566,LOC107744048,LOC107680082,LOC107703963,LOC107551267,LOC100333734,LOC108424028 coding upstream 312410 6799376 ~ 7023464 (-)
G104240 NA non-coding downstream 20951 6464364 ~ 6464861 (-)
G104225 NA non-coding downstream 56051 6367802 ~ 6429761 (-)
G104236 NA non-coding downstream 57675 6425929 ~ 6428137 (-)
G104019 NA non-coding downstream 305012 6179424 ~ 6180800 (-)
G104015 spcs2,LOC107677086,LOC107567375 non-coding downstream 308570 6175599 ~ 6177242 (-)
G104249 NA non-coding upstream 1832 6488798 ~ 6489501 (-)
G104258 LOC107551247,LOC107599327,LOC107599328 non-coding upstream 127328 6614294 ~ 6615539 (-)
LOC122358743 NA non-coding upstream 230841 6717807 ~ 6718527 (-)
LOC122358742 NA non-coding upstream 232099 6719065 ~ 6720572 (-)
G104255 NA non-coding upstream 232105 6719071 ~ 6720975 (-)
G104011 NA other downstream 339295 6146173 ~ 6146517 (-)
LOC122359408 LOC107744036,LOC107704290,LOC107562996,LOC107680065 other downstream 684731 5794803 ~ 5801081 (-)
pgm2l1 pgm2l1,LOC107684026,LOC107677044,LOC107569072 other downstream 736061 5737456 ~ 5749751 (-)
G103825 NA other downstream 1046865 5438048 ~ 5438947 (-)
LOC122359119 NA other downstream 1776732 4707814 ~ 4709080 (-)
mmp28 mmp28 other upstream 624290 7111256 ~ 7119286 (-)
G104603 LOC107703035,LOC107750119,LOC107551239 other upstream 1082880 7569846 ~ 7572090 (-)
G104628 NA other upstream 1152678 7639644 ~ 7640339 (-)
G104695 LOC107750114,LOC107701289,LOC107702996,LOC107720420,LOC107570341 other upstream 1470870 7957836 ~ 7958231 (-)
nipsnap2 gbas,LOC106581053 other upstream 1557856 8044822 ~ 8050710 (-)

Expression


Co-expression Network