LOC122358743


Basic Information

Item Value
gene id LOC122358743
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 6717807 ~ 6718527 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU153994
ataacaataacaaatctTAGCTATAgagcttttataaaaatattgctatttCATATAACTTTTGGACATAGAGTAGGCACTGATAATATACTGATGTCATCTTTTAGAGAATAAAAAGCGGAGAgttctgaatgtttttactctaaactcaaactgaaaacagatcaAGGTGCTGGATCAAATGATGTGACGTATGCTCAGGTTAAATAGAAATGACAAGAATCCCGGGATACTGATTTCTGTTGAGAAGAGCTGACCAGGATCTTCAATGCTGTGTAATAACCTTTATTGAGCACCTGATGTCAGTAGATTTATCAGAACTTAATATTAGAGATTCAAACCCTCGTGTGAGTCAAAAAGTTTGCATGCTTATCTTTCATtgttagaggaaaaaaagaagaaaataagaaagaaagaaatatgattTGGGAATGATGATTAGTGAAAACCCTGAAATATTAAGGAACTTTTATATTGTGAAACCAGGTCTGGTAAAGTTAAAGTTAgctgtaaatgtatatgtagaaaagtatttttacattttatttcatttttattgtatagaaAACTTTAGCTCTTTGTATATGCTgtcttttaaattctaaaaatatttatcaa
>XR_006252638.1
AAAAAGCGGAGAgttctgaatgtttttactctaaactcaaactgaaaacagatcaAGGTGCTGGATCAAATGATGTGACGTATGCTCAGGTTAAATAGAAATGACAAGAATCCCGGGATACTGATTTCTGTTGAGAAGAGCTGACCAGGATCTTCAATGCTGTGTAATAACCTTTATTGAGCACCTGATGTCAGTAGATTTATCAGAACTTAATATTAGAGATTCAAACCCTCGTGTGAGTCAAAAAG

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko04062 Chemokine signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU153994 True 618 lncRNA 0.30 2 6717807 6718527
XR_006252638.1 False 248 lncRNA 0.38 2 6718065 6718415

Neighbor

gene id symbol gene type direction distance location
LOC122358559 NA coding downstream 85895 6630756 ~ 6631912 (-)
LOC122359418 NA coding downstream 113594 6582796 ~ 6604213 (-)
LOC122359416 NA coding downstream 169572 6542868 ~ 6548235 (-)
LOC122358910 cdkl1,LOC107551271,LOC107680089,LOC107598661,LOC108424097,LOC105890602,LOC107703957 coding downstream 305112 6397789 ~ 6412695 (-)
zmp:0000001236 maml2,LOC107598561,LOC107744020,LOC107714095,LOC107555004 coding downstream 323587 6349486 ~ 6394220 (-)
LOC122358733 LOC107598566,LOC107744048,LOC107680082,LOC107703963,LOC107551267,LOC100333734,LOC108424028 coding upstream 80849 6799376 ~ 7023464 (-)
LOC122358728 NA coding upstream 123418 6841945 ~ 6859791 (-)
LOC122358727 NA coding upstream 266803 6985330 ~ 6994184 (-)
LOC122358868 LOC107703955,LOC107744030,LOC107598617 coding upstream 344173 7062700 ~ 7074258 (-)
taf15 taf15,LOC107703972,LOC107728230,LOC107598573 coding upstream 401535 7120062 ~ 7126137 (-)
G104258 LOC107551247,LOC107599327,LOC107599328 non-coding downstream 102268 6614294 ~ 6615539 (-)
G104249 NA non-coding downstream 228306 6488798 ~ 6489501 (-)
LOC122358561 NA non-coding downstream 230841 6485812 ~ 6486966 (-)
G104240 NA non-coding downstream 252946 6464364 ~ 6464861 (-)
G104225 NA non-coding downstream 288046 6367802 ~ 6429761 (-)
LOC122358742 NA non-coding upstream 538 6719065 ~ 6720572 (-)
G104255 NA non-coding upstream 544 6719071 ~ 6720975 (-)
G104294 NA non-coding upstream 87765 6806292 ~ 7036830 (-)
LOC122358745 NA non-coding upstream 122809 6841336 ~ 6841692 (-)
LOC122358744 NA non-coding upstream 201383 6919910 ~ 6920260 (-)
G104011 NA other downstream 571290 6146173 ~ 6146517 (-)
LOC122359408 LOC107744036,LOC107704290,LOC107562996,LOC107680065 other downstream 916726 5794803 ~ 5801081 (-)
pgm2l1 pgm2l1,LOC107684026,LOC107677044,LOC107569072 other downstream 968056 5737456 ~ 5749751 (-)
G103825 NA other downstream 1278860 5438048 ~ 5438947 (-)
LOC122359119 NA other downstream 2008727 4707814 ~ 4709080 (-)
mmp28 mmp28 other upstream 392729 7111256 ~ 7119286 (-)
G104603 LOC107703035,LOC107750119,LOC107551239 other upstream 851319 7569846 ~ 7572090 (-)
G104628 NA other upstream 921117 7639644 ~ 7640339 (-)
G104695 LOC107750114,LOC107701289,LOC107702996,LOC107720420,LOC107570341 other upstream 1239309 7957836 ~ 7958231 (-)
nipsnap2 gbas,LOC106581053 other upstream 1326295 8044822 ~ 8050710 (-)

Expression


Co-expression Network