LOC122358728


Basic Information

Item Value
gene id LOC122358728
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 6841945 ~ 6859791 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258564.1
TCTTGAGACTTTAAcacagtctgtgtttaaccGTCTGTCATCATTCAGTCAGTATGGAGCTCAGTCAACTTCCTCTTGTGTTCTtgctgatTTCAAATATCTACTCTGAACAAACTCAAGaaaaactgaaaccCAGAGTGATCATTAAACCTGATCAACATGTGTTCAGAGGAGAAACAGTCACTCTCAGATGTGACATATATGATGAAGGAGTCACTAGCTGGAGATACTTCTGGTATAAAGAAGGTTTAGGCAGTGTTTTCAAGTATGGACAGGAACACACATTCAGTTCTGTTTCTGAGTCTGACTCAGGTGAATACTCCTGTGATAGATTTAATGGATCGAATGGGTCTCCCCGCAGTGATGTAGTTACTCTGACAGTATCAGAAAGACCAAAACCCAGAGTGAACATTAAACCTGATCAACATGTGTTCAGAGGAGAAACAGTCACTCTCAGATGTGACATATATGATGAAGGAGTCACTAGCTGGAGATACAGCTGGTATAAAGATAATTCAAGAGGAGTTTTCAGTGATGGACAGGAACACAAGATCTGGTTTGTTACTGAGTCTGACTCAGGTGAATACTCCTGTGAAGGATCAGAGATCAGAGGATCACGCCGGTCACACACGAGTGATAAAGTTACTCTGAAAGTATCAGATCTTCCTAAACTGACTCTGACAGCTGATCCTCAGAGTCCAGTGTTCACCGGAGACTCAGTTACTCTGAGATGTGAGGGGATTCAGTCACAGAATGGATGGGAGTTTCTCTGGAGAAAAGACTCAAACCCTGAATCTACTGAAGATCAAACTAAAACAATCAAACCTGAGAAAGTCTCTGATGAAGGAAAGTACAGCTGCAGAGCACGAAGAGGAGAATATTACACAGATTACAGTAAACCTGTAACAGTAACAGTATACGAAAGACCAAAACCCAGAGTGAACATTAAACCTGATCAACATGTGTTCAGAGGAGAAACAGTCACTCTCAGATGTGACATATATGATAAAGGAGTCACTAGCTGGAGATACAGCTGGTATAAAGATAATTCAAGAAGAGTTTTCAGTGATGGACAGGAACACACATTCAGTTCTGTTACTGAGTCTGACTCAGGTGAATACTCCTGTGAAGGATCAGAGATCAGAGGATCACGCCGGTCACACACGAGTGATAAAGTTACTCTGAAAGTATCAGATCCCAAATCAGTTTTAAGTGTTTCTCCACAGAAGTGGTTGACTGAAGGAGAtccagtgactctgatctgtgaGGTTCACAACTTCTCTACAGGCTGGACGTTCAGCTGGTTCACTTTAACTGAATCACCAGGTGGTTATCATCTGctctcagacagcagcagaggagcaggaggaagaTACAGGATCAGTTCTGCTGCTGTAGATCACACAGGAGTTTATGTgtgcagagcagagagagagaaatcatcTTATAAAACACAGTACAGCAATAAACAGCTGCTGTGGGTCACCGGTGTTTCTGCTCCAGTCTCTCTGAGGGTCAGTCCCAGCAGAACTCAACACTTCAgatctgactctctctctctgagctgtgaAGACCAGAGTAACTCTACTGTATGGAGAGTGAAAAGATACACAGACAGTGATCTGGAAGATTGTTCATCAATACCTCGAGGATCACACACAGGATCTACATGTACAATCAGTTACGTCTATACATCACTCACTGGAGTGTACTGGTGTGAGTCTGAATCTGGAGAGAAACATCATCCTGTTAATATCACTGTACACTCTGAAGTGATTCTGGAGAGTCCTGTTCATCCTGTGACTGAAGGAGATAGTCTGACTCTACACTGTTTATATCAATACACAACTCCATCAAACCTCAGAGCTGATTTCTATAAAGATGGATCACTCATCCAGAATCAAAATACAGAGATGATCATCTCTCCTGTCTCAAAGTCACACGAGGGTTTCTACTCCTGCAAacacccagagagagagtcaccCAAGAGCTGGATCTCAGTCAGACCTTCTACAGGCTCAGTATCTGAGGATCTCAAACCCATGATAATTGGAGTAACAGCAGGACTGACTGCAGTCTTCATTGTTGTCTTCTTGGTTCTGCTCTGGTGCTACAGAAACAACAAAggtctttttaattttacatcatACATTTACAGACACTGACTCTGTTCCTAATCAGCTGGTTGAGATGGTTTTCTGCTCTTAACTGGTCTCCCAAACCTGGTAAAGATGTTTTTTAGACTGAGTTTAGAAGGTTTCTAGGCAGTTTTCAactgcattcttcaaaataaaggaTCCAGAAGGTCTGCTATAAAGagctttttgttaattgaaaatTTTCCATTGACATTTATTCCCGGTTCCATTGATGCCAGTAAAGAAGTTTTATTTGAACAGGTGTTAAATCTCCTTCTAATGTGAATCCAACATCAGACCAGAACCAGAGTGACGCCGGACACAATACACTGCTGACTGGAACTGCTCATGTGTATGACTCTGTTGATGTTCTTGTTAATAATGACCGTGTTAGTGCACCTGCTGAACT

Function

GO:

id name namespace
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258564.1 True 2547 mRNA 0.42 15 6841945 6859791

Neighbor

gene id symbol gene type direction distance location
LOC122358587 NA coding downstream 120751 6669847 ~ 6721194 (-)
LOC122358559 NA coding downstream 210033 6630756 ~ 6631912 (-)
LOC122359418 NA coding downstream 237732 6582796 ~ 6604213 (-)
LOC122359416 NA coding downstream 293710 6542868 ~ 6548235 (-)
LOC122358910 cdkl1,LOC107551271,LOC107680089,LOC107598661,LOC108424097,LOC105890602,LOC107703957 coding downstream 429250 6397789 ~ 6412695 (-)
LOC122358727 NA coding upstream 125539 6985330 ~ 6994184 (-)
LOC122358868 LOC107703955,LOC107744030,LOC107598617 coding upstream 202909 7062700 ~ 7074258 (-)
taf15 taf15,LOC107703972,LOC107728230,LOC107598573 coding upstream 260271 7120062 ~ 7126137 (-)
porb porb,LOC107728227,LOC107598574,LOC107703971,LOC107749051,LOC108424088,LOC108280677 coding upstream 268544 7128335 ~ 7150841 (-)
dock10 dock10,LOC107703970,LOC107703008 coding upstream 300545 7160336 ~ 7233359 (-)
LOC122358745 NA non-coding downstream 253 6841336 ~ 6841692 (-)
G104255 NA non-coding downstream 120970 6719071 ~ 6720975 (-)
LOC122358742 NA non-coding downstream 121373 6719065 ~ 6720572 (-)
LOC122358743 NA non-coding downstream 123418 6717807 ~ 6718527 (-)
G104258 LOC107551247,LOC107599327,LOC107599328 non-coding downstream 226406 6614294 ~ 6615539 (-)
LOC122358744 NA non-coding upstream 60119 6919910 ~ 6920260 (-)
G104314 LOC107680077,LOC107551265,LOC107703961,LOC107744046,LOC107598567 non-coding upstream 177935 7037726 ~ 7039192 (-)
G104252 cldne,LOC107680074,LOC107703976,LOC107598571,LOC107551262 non-coding upstream 182603 7042394 ~ 7098067 (-)
G104570 NA non-coding upstream 630315 7490106 ~ 7490776 (-)
G104572 NA non-coding upstream 637195 7496986 ~ 7497259 (-)
G104011 NA other downstream 695428 6146173 ~ 6146517 (-)
LOC122359408 LOC107744036,LOC107704290,LOC107562996,LOC107680065 other downstream 1040864 5794803 ~ 5801081 (-)
pgm2l1 pgm2l1,LOC107684026,LOC107677044,LOC107569072 other downstream 1092194 5737456 ~ 5749751 (-)
G103825 NA other downstream 1402998 5438048 ~ 5438947 (-)
LOC122359119 NA other downstream 2132865 4707814 ~ 4709080 (-)
mmp28 mmp28 other upstream 251465 7111256 ~ 7119286 (-)
G104603 LOC107703035,LOC107750119,LOC107551239 other upstream 710055 7569846 ~ 7572090 (-)
G104628 NA other upstream 779853 7639644 ~ 7640339 (-)
G104695 LOC107750114,LOC107701289,LOC107702996,LOC107720420,LOC107570341 other upstream 1098045 7957836 ~ 7958231 (-)
nipsnap2 gbas,LOC106581053 other upstream 1185031 8044822 ~ 8050710 (-)

Expression


Co-expression Network