timm50 (timm50,LOC107586258,LOC107662791,LOC107729126,LOC107728222,LOC107657563,LOC107597550)


Basic Information

Item Value
gene id timm50
gene name timm50,LOC107586258,LOC107662791,LOC107729126,LOC107728222,LOC107657563,LOC107597550
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12070301 ~ 12093172 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259547.1
TCCGCTCGCGCTCCGTGCACTAGCTGCATCATATTCAAGATGTCGGCGGTGTCTGTGTATCCCATGTGTGTCCGGGCGAGCCGGGGCCTCTTCAGACTGAGGCAGGGGGCCAGAGGCTCCAGGGCTCCCGTGGAGCTGGATGTTGTCAGGGCTTTCTCTGCCGACACATCCAGTAGCAGCACTACAGGAGGACTGGCCCAGGCAATACTTCAGGAGAGgctccagcagcagcagaaaagcCAGGGCCAGCCTCCTCCAGAGGGTGATGAGTCTGGTGACAAGAAAAATGAACAGGGTGAGGacaagaaacagaaagagaacacCGCATATGCTAAGAAGGTGGTCCTTCGGTTAGCAGGAATCATGGGACTTGGAAGCACAGTCGGCATCGTGTATATATTCGGTAGCAATTCTGTGGATGAGCAAGGAAACAAGattCCAGATGAGTTTGATAATGATGTTCCTGTCATCCAGCAGCTCAGAAGaacctttaaatatttcaaagatTACAGACAGATGATCATGGAGCCCACAAGCCCAAAGCTTCTTCCAGACCCTCTGCGAGAACCCTACTACCAGCCTCCGTACACTCTAGTGCTGGAGCTCACTGACGTCCTCCTCCATCCTGAGTGGTCGTTGGCGACAGGCTGGCGTTTTAAGAAGAGGCCTGGCATAGATTACCTGTTCCAGCAACTGGCCCCGCTTTATGAGATAGTCATCTTCACATCAGAGACGGGCATGACGGCATACCCCTTGATTGACAGCATAGACCCTCAAGGATTTGTGATGTACCGGCTCTTCAGAGATGCCACGCGCTACATGGAGGGCCACCATGTTAAGGATGTGTCTTGTTTGAACAGAGACTCCGCTAAAGTCATTGTGGTGGACTGTAAACGAGAGGCATTCGGTCTGCAGCCTTTCAATGGCCTGGCGCTGCGCAAGTGGGATGGCAACTCCGAGGATCGCACGCTCTATGACTTGGCTGCTTTCCTTAAAACTATAGCCATCAGCGGAGTAGAGGATGTGCGTTCAGTGTTAGAGAACTACGCCCATGAGGAAGACCCCATTGAGGCCTTCAAAGGAAGACAGGCACAGCTTGCACAGGAAGAAGAACAGAGACTTTCGGAGCTTGCGCAACAGAAGAAACAGGGATTTTCTTTAGGTACCATCGCAGGTCGTTTCTGGTCCCGGAAGCAGCAATGATGACTCGTCCTGCTCACACCCACCTGATACGGTCCCACCCGGACAGTGGCCGGCCATTGAGAGGAGGGTCACAGTCAGACAGGTGGACGgtggagggagggagggaagaACGGGAGCGCAAGGGCAagtgtggggggaaaaaaaacatctgaagagATGCTACCTTCCAAAAAGACGTTCCATTCCTTGTGGAAAACAGCACTTCCTGGACAGCAGACACACAGATACGGCGCCCTAATGTATGATCTAACTGAATAGAAATTGCTTCAGAGTGGTTGGACCAGTTTCTATCCACTTCTTGGCTCCCTCATCTCTGCAAGAGCAAAGGCCTCCCATGTGAACTGAAAAACTGATGCTGTCTCCGTCAAGTAGATTCTATTTCAAACCCGTAACTGATGCTGTAGGCAATAGCCTGGttttagactttaaaaaaagtctgcTTGGTACACGGCACATGCTGCGAAACCTTGGGCCTGTGTTCGTGCTGCCAGTGAAGACTGTCTTTGTCATGGTGATACTGTTGCAGTGTGTTGAGGAGAACCTCTCGATTAAAGAGCTCAATCTGGTGCTATTTCCCTTCATGACAGAAATGGCCCATTAAGTCCGAGGATGTGCTTGTGGAATGTTCTTTGTATTGCTTTTGTTGTGAAACACCCAGAATatcttaataaaacaaaccataACTTAA

Function

symbol description
timm50 Predicted to enable protein serine/threonine phosphatase activity and protein tyrosine phosphatase activity. Acts upstream of or within apoptotic process. Predicted to be located in mitochondrial inner membrane. Predicted to be part of TIM23 mitochondrial import inner membrane translocase complex. Is expressed in several structures, including immature eye; margin; midbrain; pectoral fin musculature; and segmental plate. Human ortholog(s) of this gene implicated in 3-methylglutaconic aciduria type 9. Orthologous to human TIMM50 (translocase of inner mitochondrial membrane 50).

NR:

description
PREDICTED: mitochondrial import inner membrane translocase subunit TIM50

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0007006 mitochondrial membrane organization biological_process
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0015031 protein transport biological_process
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K17496 TIM50; mitochondrial import inner membrane translocase subunit TIM50

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259547.1 True 1891 mRNA 0.51 11 12070301 12093172

Neighbor

gene id symbol gene type direction distance location
dlc LOC107729127,LOC107586259,LOC107662790,LOC107728223,LOC107657561,LOC107597549 coding downstream 4583 12060861 ~ 12065718 (-)
rnaset2l LOC107729117,LOC107662787,LOC107586263,LOC107723000,LOC107657558,LOC107597545 coding downstream 43841 12023064 ~ 12026460 (-)
ppp1r14ab ppp1r14ab,LOC107597604,LOC107586311,LOC107662758,LOC107729097,LOC107657554 coding downstream 126727 11932931 ~ 11943574 (-)
exoc3l2b exoc3l2b,LOC107586290,LOC107662783,LOC107726108,LOC107729130,LOC107597542 coding downstream 138593 11902075 ~ 11931708 (-)
med13b med13b,LOC107726096,LOC107662782,LOC107729113,LOC107657551,LOC107597541,LOC107586266 coding downstream 170849 11871759 ~ 11899452 (-)
tpst1 tpst1,LOC107662793,LOC107657564,LOC108425813 coding upstream 51267 12144439 ~ 12179803 (-)
aldh3a1 aldh3a1,LOC107657568,LOC107597555 coding upstream 106760 12199932 ~ 12206327 (-)
aldh3a2a aldh3a2a,LOC107586255,LOC107662794,LOC107729125 coding upstream 113234 12206406 ~ 12210575 (-)
LOC122359167 LOC107586254,LOC107662798,LOC107657544,LOC107717252 coding upstream 152553 12245725 ~ 12247729 (-)
usp2a usp2a,LOC108425809,LOC105920897,LOC107662797,LOC107729105,LOC107717278,LOC107586252 coding upstream 154809 12247981 ~ 12270046 (-)
G106001 NA non-coding downstream 27279 11951281 ~ 12043022 (-)
G106015 NA non-coding downstream 49853 12016398 ~ 12020448 (-)
G106010 NA non-coding downstream 58099 12011315 ~ 12012202 (-)
G106003 NA non-coding downstream 119281 11949983 ~ 11951020 (-)
G106002 NA non-coding downstream 122874 11945022 ~ 11947427 (-)
G106028 NA non-coding upstream 3720 12096892 ~ 12097491 (-)
G106049 NA non-coding upstream 125929 12219101 ~ 12220645 (-)
G106070 NA non-coding upstream 306915 12400087 ~ 12401495 (-)
G106079 NA non-coding upstream 335166 12428338 ~ 12428589 (-)
G106081 NA non-coding upstream 338739 12431911 ~ 12447046 (-)
chp2 chp2,LOC107586310,LOC107729099,LOC107657559,LOC107662757,LOC107722999,LOC107597544 other downstream 36707 12030648 ~ 12033594 (-)
auts2b LOC107726097,LOC107586267,LOC107662780,LOC107657550 other downstream 214406 11842766 ~ 11855895 (-)
LOC122358627 vps26b,v26bl,LOC107699898,LOC107748589,LOC107582573,LOC107713444,LOC107597524 other downstream 712748 11353646 ~ 11357553 (-)
LOC122358625 LOC107662756,LOC107657263,LOC107729089,LOC107717280,LOC107586244,LOC107709114 other downstream 728185 11326512 ~ 11342116 (-)
LOC122358622 atf5b,LOC107582581,LOC107701416,LOC107713463,LOC107717185,LOC107597512,LOC107659920,LOC107736467 other downstream 765491 11302230 ~ 11304810 (-)
LOC122359155 LOC107662800,LOC107729090,LOC107586245,LOC107586286 other upstream 187119 12280291 ~ 12290052 (-)
ercc2 ercc2,LOC107743694,LOC107601732,LOC107718279,LOC107585555,LOC107690444 other upstream 1361310 13454482 ~ 13461103 (-)
LOC122359192 usf1,LOC107601709,LOC107717282,LOC107657261,LOC107586305,LOC107677518 other upstream 1651383 13744555 ~ 13751057 (-)
G106570 pafah1b1,LOC107744786,LOC107690414,LOC107592620,LOC107743664,LOC107664934,LOC102225619 other upstream 1785413 13878585 ~ 13881694 (-)
G106571 lis1a,pafah1b1,LOC107664934,LOC107743664,LOC108431306,LOC103047044,LOC107585584 other upstream 1790748 13883920 ~ 13905494 (-)

Expression


Co-expression Network