LOC122327471 (LOC107698560)


Basic Information

Item Value
gene id LOC122327471
gene name LOC107698560
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 4374805 ~ 4378735 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222863.1
ACCAGGTTTCAGTTTGACGCTGAAGATGAGCTGAGAAGAAGTCACAGTTGTGAGATGGCAGACGTTATTAACTTATTGCACACTTCTCACTGAACAattgaagaaaatgtattacatgTTTGCTTTGTTCTGCTTGGGCTGGTGGCATCTGATTGATATGTTTGGTGAGTCTGTGTCGGTGACGGAGGGAGATTCTGTGACTCTAAACACTAATCTCACTGAAATACATGAACATGATGATATACTGTGGAAATTTGGAGCTGAAAGGTTTCAAATAGCTAAAATGAAGACAAGGAATCGAAATGTTCCCACATATGACGGTCCTGatgggagattcagagacagactgaagctggacgatcaaactggatctctgaccatcacgaaCATCTCGACTCAACACGCTGGAGATTATCAGCTAGAGATAACAGGAGcgaaaaaatctttaaaaacattcagtgttTCTGTCTATGCTCGTCTGCCTCTTCCTGTCATCAGCAGTAACTCTTCAAACTGTTCATCATCATCTTGTTCATTGTTGTGTTCGGTGGTGAACgtgggtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggagaaaaacacctacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgAACATCAGTCAGCTCTGTCACACGTGTTCAGACTCTGTTTATCTGATAGCACTGatttctgctgctgctggatcTCTGTTGATCGTAGCTGGGGTTGTGATCTTCTGCATCTGCAggaaatGTCAGACAAAAAGGACAGAGAGGACTCATACTGTACGATTTAAAACAACATCcaaaaaaaagAAATCAATCGATGGGCATCTGTATGGAAATTTCACAGCAAAGCCTTGATCATATACATAATTTGTTGTAATAGAATAAATGTTATACATTAACAATAtctaatagaaaacaaataaaagaggGAAAGAAAGGCTGAAAGAAG

Function

NR:

description
PREDICTED: SLAM family member 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222863.1 True 1049 mRNA 0.41 6 4374805 4378735

Neighbor

gene id symbol gene type direction distance location
LOC122327486 NA coding upstream 7009 4363140 ~ 4367796 (+)
LOC122327472 LOC107698560 coding upstream 13686 4356543 ~ 4361119 (+)
rnasel2 NA coding upstream 55425 4318224 ~ 4319380 (+)
LOC122328151 NA coding upstream 66477 4306502 ~ 4308328 (+)
LOC122327509 NA coding upstream 86820 4280323 ~ 4287985 (+)
LOC122328102 LOC107698560 coding downstream 3357 4382092 ~ 4408668 (+)
LOC122327506 LOC107568440,LOC107741386 coding downstream 42421 4421156 ~ 4425579 (+)
LOC122327418 NA coding downstream 74625 4453360 ~ 4457107 (+)
LOC122327458 NA coding downstream 90047 4468782 ~ 4471793 (+)
LOC122327492 NA coding downstream 111689 4490424 ~ 4492053 (+)
G149263 NA non-coding upstream 3670 4345277 ~ 4371135 (+)
LOC122327592 LOC107737287 non-coding upstream 62704 4308449 ~ 4312101 (+)
G149258 NA non-coding upstream 73906 4298705 ~ 4300899 (+)
G149195 NA non-coding upstream 99286 4268499 ~ 4275519 (+)
G149238 LOC107689434 non-coding upstream 138333 4215345 ~ 4236472 (+)
LOC122327602 NA non-coding downstream 49580 4428315 ~ 4429222 (+)
LOC122327608 NA non-coding downstream 55082 4433817 ~ 4435660 (+)
LOC122327579 NA non-coding downstream 126277 4505012 ~ 4507296 (+)
LOC122327607 NA non-coding downstream 213086 4591821 ~ 4592182 (+)
G149339 NA non-coding downstream 235573 4614308 ~ 4614926 (+)
LOC122327447 LOC107741386,LOC107568440 other upstream 134018 4213226 ~ 4240787 (+)
LOC122327446 NA other upstream 315432 4053527 ~ 4059373 (+)
G149157 LOC107561598,LOC107717161,LOC107549384,LOC107742789,LOC107704500 other upstream 521434 3852063 ~ 3853371 (+)
LOC122328138 NA other upstream 595129 3777580 ~ 3779676 (+)
G148992 NA other upstream 779505 3592661 ~ 3595300 (+)
LOC122327552 LOC107568440,LOC107698560 other downstream 40828 4419563 ~ 4421001 (+)
LOC122327412 LOC107698560 other downstream 319457 4698192 ~ 4730700 (+)
LOC122327517 NA other downstream 334127 4712862 ~ 4716003 (+)
LOC122328161 NA other downstream 613276 4992011 ~ 4998974 (+)
LOC122327529 NA other downstream 724758 5103493 ~ 5107424 (+)

Expression


Co-expression Network