LOC122341986 (pirt)


Basic Information

Item Value
gene id LOC122341986
gene name pirt
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3618343 ~ 3620127 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235749.1
aatcctCTTGAAGCTCTTTCTATCATttgtcttctctttttcttctgctgGTAAATAGAGAATGAATggacagagagaggaggagaaagaaaaggatgAGAGAGTGTGGAAATgtgaggagaggaggagggagaaTTCCACTTAGTGTCCATCTAATGCACTTTACccccctcccacacacacacacacacacacacacacctctctctctctcacgcctCTTAGGTCTTGGATCATCTCACAGCAGAGGACTTGACAGGACGGATGCTCATCTGACAGATCAGACAGATATCAGACTCCAGAGGATCctcagcatcacacacacacacacacacacacacacacacatctgacagGCGTACCAGAGACGCAGGGGTGCGGGACGTCCGGAGACATGTCGTCTGTCCCAGAGCCCCCGCCTCCCGGGGACTGTCCTCGCTCGTGTTCCCGAGAGCAGCTCACGCCTCGATCGGAGAACACGGTCTTCAGCCTGGCCCACAACGACACCTTCTGGACCCTGCAGCCCGCTCCGGGCAACTGCGAGTACTACTGGCACGCCATCCTCCTCATGACCTCCGGGGGCAGCGTGCTGCTCTGCGGGATGGTGCTGAGCGGACTTTACTTCGCCGGCTTCTCCATGATGGCCACCAATATCCTGGGCCCCGCTCTGCTGTCCGTGGGGCTGATGGTGCTGGTGGTGGGGGTGGTTTTGATGCCCATCACACAACAGATGAGGCGTCAGAGCGCAACGAAACGCAGTTATTACAAGCCTCACATAAACCTATGAGGAGAACTTATCAGGTCTCTGTTcggatagtgaggacagctcACCCAGAAATAAAGCgcctgtcatcatttgctcgcCCTCCTTGGTGACAGACGTTTCATTCGTTGAGGGTGAAATGTCCTTTTGAAGCAAGACACCGCAGGCAGAACGTTTCAAACATGTctactaaaatgaaatgtaacgCTCTAAACAAAAACGCTAATTCGGAATATCGATGAAAGCGAGTAcgtaaatcatttaaatgaacttaaatatGTTAGGAAATATGTTTAGGTTGAAGCATTAGAATTacacacaacaataaaaaaaaaaaaaaaaacaataaataaatacattttaaatacctcaca

Function

symbol description
pirt Predicted to enable phosphatidylinositol bisphosphate binding activity and transmembrane transporter binding activity. Predicted to be involved in phosphatidylinositol-mediated signaling and positive regulation of cation channel activity. Predicted to act upstream of or within behavioral response to pain and response to heat. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

NR:

description
PREDICTED: phosphoinositide-interacting protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235749.1 True 1137 mRNA 0.49 2 3618343 3620127

Neighbor

gene id symbol gene type direction distance location
LOC122333516 LOC107695639,LOC107696327,LOC107718940,LOC107571536 coding downstream 1852 3613952 ~ 3616491 (-)
foxk2b LOC107695695,LOC107710983,LOC107718935,LOC107696365 coding downstream 11215 3586641 ~ 3607128 (-)
hlfa hlf,LOC107710981,LOC107718936 coding downstream 74931 3527737 ~ 3543412 (-)
nog1 nog1,LOC107710974,LOC107695666,LOC107718944,LOC107567560,LOC107601571,LOC107696324 coding downstream 167250 3436686 ~ 3451093 (-)
rbfox3b LOC107719784,LOC107695689,LOC107751640,LOC107696360,LOC107601602 coding downstream 240329 2712958 ~ 3378014 (-)
LOC122342169 LOC107695697,LOC107696366 coding upstream 15820 3635947 ~ 3711514 (-)
elac2 elac2,LOC107750164,LOC107695696,LOC107575629 coding upstream 168941 3789068 ~ 3808384 (-)
map2k4a LOC107695698,LOC107756562,LOC107570719,LOC108433489 coding upstream 194754 3814881 ~ 3828692 (-)
LOC122341930 LOC107750166,LOC107663479,LOC107655787,LOC107716258,LOC107721796,LOC107720837,LOC107721799,LOC107575760 coding upstream 211843 3831970 ~ 3846985 (-)
LOC122334199 NA coding upstream 246628 3866755 ~ 3874839 (-)
G16779 NA non-coding downstream 91495 3503008 ~ 3526848 (-)
G16780 NA non-coding downstream 93105 3475325 ~ 3525238 (-)
G16781 NA non-coding downstream 95095 3517813 ~ 3523248 (-)
G16753 NA non-coding downstream 347034 3270076 ~ 3271309 (-)
G16475 NA non-coding downstream 971593 2645891 ~ 2646750 (-)
G16815 NA non-coding upstream 1362 3621489 ~ 3621869 (-)
LOC122342142 NA non-coding upstream 163610 3783737 ~ 3786865 (-)
G16901 NA non-coding upstream 516991 4137118 ~ 4138203 (-)
G16926 NA non-coding upstream 614248 4234375 ~ 4277855 (-)
G16930 NA non-coding upstream 645084 4265211 ~ 4267492 (-)
LOC122341810 pctp,LOC107710979,LOC107695691,LOC107718942,LOC107567557,LOC107579518 other downstream 134894 3473444 ~ 3483449 (-)
LOC122333478 LOC107695702,LOC107724673,LOC107601588,LOC107553654,LOC107716264,LOC107673211 other downstream 299157 3314752 ~ 3319186 (-)
G16478 NA other downstream 964313 2649842 ~ 2654030 (-)
nup85 nup85,LOC107677339,LOC107569694,LOC107696313,LOC106601803 other downstream 978252 2631782 ~ 2640091 (-)
LOC122341591 NA other downstream 1134113 2479128 ~ 2484230 (-)
LOC122341931 LOC107673185,LOC107720837,LOC107573119 other upstream 227853 3847980 ~ 3863851 (-)
LOC122340684 cyp2k6,LOC107678271,LOC107553656,LOC107678272 other upstream 364529 3984656 ~ 3987431 (-)
G16953 adcy9,LOC107695715,LOC107718568,LOC107715643,LOC107553626,LOC107661757,LOC101884360 other upstream 782970 4403097 ~ 4407697 (-)
G17131 trap1 other upstream 827253 4447380 ~ 4448881 (-)
G17133 trap1,LOC107573746 other upstream 830188 4450315 ~ 4453135 (-)

Expression


Co-expression Network