nog1 (nog1,LOC107710974,LOC107695666,LOC107718944,LOC107567560,LOC107601571,LOC107696324)


Basic Information

Item Value
gene id nog1
gene name nog1,LOC107710974,LOC107695666,LOC107718944,LOC107567560,LOC107601571,LOC107696324
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3436686 ~ 3451093 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235533.1
ATCTTCTTGGTCAAAACATGCTTAAAGCTCTGAAGGAGGTGTCGGGGAATCTCCTGCAAACAAACTCACATTCAAAAGCCCAGAACCGCCGTATTACATCACTGGGCCGCGCGTGTATATAGGAGAGGCGCGCGCGTCAGAGAGGCATTCCCGGAGTTTTCGGCTCGCGCTGACGCGTCGCGTTGCGGGACTTTTCACGCGTGATGCTGCGCACGACTCCGACTCATTCGACCGCCGGCATCGCGAGTGAGATGGATGGATAGCTCCGCATCCGCGTCGGATAAAGTTGAGTTTCTGCGATTTTCGCCCGCGTTTTTTTCCCGCGATGGATCTCCCGAGGTGTTTGGTGACCGCGTACCTGCTCCTGGTGTCCCTCGCTCAGTGCCAGCACTATTACCTCCTCAGACCCATCCCGAGTGACACCTTACCCCTGCTGGAGCTCAAGGAGGACCCCGACCCCGTCTACGACCCGCGGGAGAGGGACCTAAACGAGACCGAGCTGCGGAGCGCGCTCGGAGACTTTGACAGCCGCTTTCTGTCCATCGCTCCTCCTCAGGACCGCTACACCGGCaacgaggagctggaggagctgGATCTCCAGCAGCAGAACCCTACCGGGACCATGCCCAAAGACATCAAGAACCTGGACTTTGACGCGCAGTGGGGCAAGAAGCGCAAAGCCAGCAAGAAGCTGAAGCGCAGGCTGCAGATGTGGCTCTGGTCCTACTCGTTTTGCCCGGTGCTGTACGCGTGGAACGACCTCGGCGCTCGCTTCTGGCCGCGCTTCGTGCGCGCGGGGAGCTGCTACAGCAAGCGCTCCTGCTCGGTGCCGGAGGGGATGGTGTGCAAGCCGGCCAAATCCACGCACATCACGCTGCTGCGGTGGCGCTGCGTGCAGAGACGAGGCGCGCTGAAGTGCGCGTGGATACCCGTGCAGTATCCCATCATAACCGAGTGCAAGTGCTCGTGCGCGAACTGACCAATCACGAACGGcccctgggaaaaaaaaaaaaaaaagcgcacaAACTGTATGAAAACTGTCGCGGGCTGATTGCTGGACTTAAATTATGAGAAGCTGTATTGCTGTACAAAGTTTGATCCGATGCGTATTTTGGGATTTCAGTTTTTAGGGACTCTGCTTTGATGCATGTTTCTGGAAAAACAATCTCATGCAAAAAGTTCTGGATTTAagttatgaaaaatgttttattttgtattttcgtAACACTTTACGTTACATTTAAG

Function

symbol description
nog1 Acts upstream of or within dorsal/ventral pattern formation; negative regulation of BMP signaling pathway; and negative regulation of endodermal cell fate specification. Located in Golgi apparatus and synapse. Is expressed in several structures, including central nervous system; mesoderm; neural tube; optic vesicle; and presumptive shield. Human ortholog(s) of this gene implicated in Huntington's disease; cleft lip; dysostosis (multiple); hyperopia; and proximal symphalangism (multiple). Orthologous to human NOG (noggin).

NR:

description
PREDICTED: noggin

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K04658 NOG; noggin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235533.1 True 1245 mRNA 0.55 2 3436686 3451093

Neighbor

gene id symbol gene type direction distance location
rbfox3b LOC107719784,LOC107695689,LOC107751640,LOC107696360,LOC107601602 coding downstream 58672 2712958 ~ 3378014 (-)
LOC122341579 NA coding downstream 727182 2705757 ~ 2709504 (-)
LOC122341577 LOC107696344 coding downstream 730954 2700366 ~ 2705732 (-)
LOC122341582 LOC107696344,LOC107565151,LOC107672900 coding downstream 749348 2678534 ~ 2687338 (-)
LOC122341581 NA coding downstream 761899 2671657 ~ 2674787 (-)
hlfa hlf,LOC107710981,LOC107718936 coding upstream 76644 3527737 ~ 3543412 (-)
foxk2b LOC107695695,LOC107710983,LOC107718935,LOC107696365 coding upstream 135548 3586641 ~ 3607128 (-)
LOC122333516 LOC107695639,LOC107696327,LOC107718940,LOC107571536 coding upstream 162859 3613952 ~ 3616491 (-)
LOC122341986 pirt coding upstream 167250 3618343 ~ 3620127 (-)
LOC122342169 LOC107695697,LOC107696366 coding upstream 184854 3635947 ~ 3711514 (-)
G16753 NA non-coding downstream 165377 3270076 ~ 3271309 (-)
G16475 NA non-coding downstream 789936 2645891 ~ 2646750 (-)
G16467 NA non-coding downstream 830392 2606060 ~ 2606294 (-)
G16464 NA non-coding downstream 846624 2589789 ~ 2590062 (-)
G16453 NA non-coding downstream 848826 2584894 ~ 2587860 (-)
G16780 NA non-coding upstream 24232 3475325 ~ 3525238 (-)
G16779 NA non-coding upstream 51915 3503008 ~ 3526848 (-)
G16781 NA non-coding upstream 66720 3517813 ~ 3523248 (-)
G16815 NA non-coding upstream 170396 3621489 ~ 3621869 (-)
LOC122342142 NA non-coding upstream 332644 3783737 ~ 3786865 (-)
LOC122333478 LOC107695702,LOC107724673,LOC107601588,LOC107553654,LOC107716264,LOC107673211 other downstream 117500 3314752 ~ 3319186 (-)
G16478 NA other downstream 782656 2649842 ~ 2654030 (-)
nup85 nup85,LOC107677339,LOC107569694,LOC107696313,LOC106601803 other downstream 796595 2631782 ~ 2640091 (-)
LOC122341591 NA other downstream 952456 2479128 ~ 2484230 (-)
G16421 LOC107572279,LOC107572278,LOC107668191,LOC107569684,LOC107574181,LOC107574114 other downstream 986483 2444068 ~ 2450203 (-)
LOC122341810 pctp,LOC107710979,LOC107695691,LOC107718942,LOC107567557,LOC107579518 other upstream 22351 3473444 ~ 3483449 (-)
LOC122341931 LOC107673185,LOC107720837,LOC107573119 other upstream 396887 3847980 ~ 3863851 (-)
LOC122340684 cyp2k6,LOC107678271,LOC107553656,LOC107678272 other upstream 533563 3984656 ~ 3987431 (-)
G16953 adcy9,LOC107695715,LOC107718568,LOC107715643,LOC107553626,LOC107661757,LOC101884360 other upstream 952004 4403097 ~ 4407697 (-)
G17131 trap1 other upstream 996287 4447380 ~ 4448881 (-)

Expression


Co-expression Network