LOC122341577 (LOC107696344)


Basic Information

Item Value
gene id LOC122341577
gene name LOC107696344
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2700366 ~ 2705732 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235038.1
atggccacCATGTGAGAAATCAGAAAGAAATTGGGAACTGGGGCAGTATCACATTACTTGAGGGCATAAACAATTGTGCAAAAACTTTTAGCCCTCTAAAAAACAAGACATGTTTTCTGCATCTTCTAAAGGCAATTTTCTTTATATCAGAGGATATTGTAACAGAGCATTTTTCATCCTGTTACctaaattatttttcagatgtacttgtttattttcacatcaATATCTCTTACTTTCAGCACTGTTACTCATATACTCAATTATTCTATTCTTGTAGAAAAAGCAACAGAAGTGAATAGTGTTATCagatatattaatgtaaataatcaGCTACTTCTGTATTAATAGACAAATttgaaaatgcatctttttctcAATGGTTTGGCCTTCTACAATGCATTTGCCCAGAGAAATGTACTTGAGAAATGTCTGTCTTTTCAGTACTAATTTGTCACTGAATGTAGGCTAGAACTACTTTAACACCAAAAGACCGTGGCAGGCTGTTAATAAATCTGTCAGTTTAGAGTCATGTCAGAGCGTAACAAGCTAGGGATCTACatagaagaaagagaaagacaatgaAGAAGAATTgtagagatgtttgtttctgaaCAGTCAGCATTCTTGTGATTGCTGTGGTCACAAATGTTTTTCTACGCCGTTCGAAAAGCGAAAGTTAATGTCAAGATCGCTGGAGCTCAAACAGAGAAAATGCATTCGTTCGCCGAAGCTGATTTTTCTTGTCCCGTGTGTAAGGAAATCTTCGAGGATCGCGATGTTTTGACATGTGGACACAGTGTCTGCAAAGAGTGCCTTCAACAGTTCTGGAGAAGGAAGGAATCTCAGGAGTGTCCCGTCTGCATGAACCCAGCGGGTCATGATCCTATACATAACCTTGCGTTAAAAAACTTGTGTGATCTGCTCCTGAAGGAGAGAAACGAGAGGCGTTCGTCGGGATCTGAGGAGATCTGTGGTGTACACCGAGAGAAACTCAAGCTCTTCTGTCTGGAGGACAAACAGCCGGTGTGTTTAGTGTGTAGAGATTCACAGAAACACCTCAGTCACACATTCAGACCCATCGGGGAAGCCGTTTCATCGTATAAGGAGAAGCTCAATACAGCACTGAAGTCCTTACAAGAGCAACCTGAGCACAGCGTGAAAATTAAAAGAGAGTTCGAGAAAACAATTCAACACATAAAGTCTCAAGCTGATCACACAGAGAGTCAGATTAAACAGCAGTTTGAGAAGCTTCATCGGTTTCTCAGAGATGAAGAAGAAGCTACAATCAGTGCActgagggaggaagaggagcagaagaagaagatgatgaaggaGAAGCTGGAGGAGATCAACAGACACATCTCAGCTCTTTCAGACACAATCAAAGACACAGAGGAGATGATGAAAGACAACGATGTCTGCTTTCTGAAGaagTTTCCGGTCTCGATGGAAAGAGTCCAGATCTCATCACAGCCGGATCCACAGATACCTTCTGGAGCTTTGATTCATGTTCCACGATACTTGGGCAACCTGTCCTTCAGAGTCTGGAAGAAGATGCAGGACATCGTCCAGAACACTCCTGTGGTTCTGGACCCAAACACTGAAAATCAGTGGCTCGTCGTGTCTGATGATCTGACCAGCGTGAGAAACAGTAGGAACAAACAACCTCTTCCTAATAATCCAGAAAGATTTGATTATTATCCATGTGTGCTGGGTTCAGAGGGTTTTAACTCAGGGACACACAGCTGGGACGTGGAGGTTAAGGAGAGTTTAAGGTGGAGTCTTGGAATAACTACAGCATCGAACCAGAGAAAGGGATGCGATTTCTTCAGTGCTGATGTCTGGAGTGTACGGTCTGATCAGTATGGACTGTCAGAAACGTTTAGTTTTCCTGTTAAACAGGACGTTGAAAGGGTGAGAGTGTATCTGGACTACGACAAAGGAACGGTATCATTCTCTGATCCGGTGACtaacacacatctacacacattcacaaccaCCTTCACAGACACAGTCTTTCCGTTCTTCTGGATTTCTGCATTTTCCTCTCTGCGAATCTTACAGTCTAATTAGTAAACATTACACCCCTATGCTTGGAGCGGCCTGCCTTCCCTGGTGGTGAGGATCCAGAGTCTTTGACAGCTCTGCTGCTTTGTGTTAGTAATCTGATCATCTAACTCATACTAGTCTGGTTAGAAGAGCATTCTATAAGGGTCTTTCAAACATTGCTCattgtgcaaataaaaaataaaaagtataacaaACAATGATGACTATAATGgtgactataataataaaagttcaaataacTTTTCCACAAAGCGTCAGCATTAAGATGCAAACCTGAGAGCTctctccatagacagcaagggtaCTATGGTAAAGACACAGAAGCATGATAAGGGATGCATGCCCATGCGTCATGGCACACATAATGGCACTagggtgacacagaggagaAAATAGTtgaacaaaggttttatttgCATTCTTGTAGTTTCGTAAAATTACTTCTGAACCAccgatgtcacatggactattttgatGATATGCTTGCCGTGTTTCGGTGCCTTGACCTTGGCAGGACCCTTACTGAGAGTAAACTAACATTTTAATAGTGCTACTTATctacattgttgttgttttgttggtgCACCTTCTTCAAGCTTCATTATTCCTGTTTACATGCAGGATGAtacaaaacagacagaaaggcAATCCGTCAGTATGTGAAGAAATCAATGTGACAGATTTGTTCATGACAGACCCTTGGCGATGTCTGTGACATATTAAGAGCAATagttaaaacacaaataaaatgtattataagtATTCATGttctctttcttgttttttgtctgaactatct

Function

NR:

description
PREDICTED: tripartite motif-containing protein 35-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235038.1 True 2872 mRNA 0.41 6 2700366 2705732

Neighbor

gene id symbol gene type direction distance location
LOC122341582 LOC107696344,LOC107565151,LOC107672900 coding downstream 13028 2678534 ~ 2687338 (-)
LOC122341581 NA coding downstream 25579 2671657 ~ 2674787 (-)
LOC122341599 LOC107751358 coding downstream 31999 2665352 ~ 2668367 (-)
cygb1 cygb1,LOC107569691,LOC107741345,LOC107751633,LOC107696353,LOC107677343,LOC107573176 coding downstream 94955 2596687 ~ 2605411 (-)
LOC122341565 fbf1,LOC107751622 coding downstream 122027 2565436 ~ 2578339 (-)
LOC122341579 NA coding upstream 25 2705757 ~ 2709504 (-)
rbfox3b LOC107719784,LOC107695689,LOC107751640,LOC107696360,LOC107601602 coding upstream 7226 2712958 ~ 3378014 (-)
nog1 nog1,LOC107710974,LOC107695666,LOC107718944,LOC107567560,LOC107601571,LOC107696324 coding upstream 730954 3436686 ~ 3451093 (-)
hlfa hlf,LOC107710981,LOC107718936 coding upstream 822005 3527737 ~ 3543412 (-)
foxk2b LOC107695695,LOC107710983,LOC107718935,LOC107696365 coding upstream 880909 3586641 ~ 3607128 (-)
G16475 NA non-coding downstream 53616 2645891 ~ 2646750 (-)
G16467 NA non-coding downstream 94072 2606060 ~ 2606294 (-)
G16464 NA non-coding downstream 110304 2589789 ~ 2590062 (-)
G16453 NA non-coding downstream 112506 2584894 ~ 2587860 (-)
G16440 NA non-coding downstream 184705 2514767 ~ 2515661 (-)
G16753 NA non-coding upstream 564344 3270076 ~ 3271309 (-)
G16780 NA non-coding upstream 769593 3475325 ~ 3525238 (-)
G16779 NA non-coding upstream 797276 3503008 ~ 3526848 (-)
G16781 NA non-coding upstream 812081 3517813 ~ 3523248 (-)
G16815 NA non-coding upstream 915757 3621489 ~ 3621869 (-)
G16478 NA other downstream 46336 2649842 ~ 2654030 (-)
nup85 nup85,LOC107677339,LOC107569694,LOC107696313,LOC106601803 other downstream 60275 2631782 ~ 2640091 (-)
LOC122341591 NA other downstream 216136 2479128 ~ 2484230 (-)
G16421 LOC107572279,LOC107572278,LOC107668191,LOC107569684,LOC107574181,LOC107574114 other downstream 250163 2444068 ~ 2450203 (-)
LOC122341602 junbb,LOC107741351,LOC107567221,LOC107568144,LOC107696348,LOC107726104 other downstream 276820 2333556 ~ 2423546 (-)
LOC122333478 LOC107695702,LOC107724673,LOC107601588,LOC107553654,LOC107716264,LOC107673211 other upstream 609020 3314752 ~ 3319186 (-)
LOC122341810 pctp,LOC107710979,LOC107695691,LOC107718942,LOC107567557,LOC107579518 other upstream 767712 3473444 ~ 3483449 (-)
LOC122341931 LOC107673185,LOC107720837,LOC107573119 other upstream 1142248 3847980 ~ 3863851 (-)
LOC122340684 cyp2k6,LOC107678271,LOC107553656,LOC107678272 other upstream 1278924 3984656 ~ 3987431 (-)
G16953 adcy9,LOC107695715,LOC107718568,LOC107715643,LOC107553626,LOC107661757,LOC101884360 other upstream 1697365 4403097 ~ 4407697 (-)

Expression


Co-expression Network