cygb1 (cygb1,LOC107569691,LOC107741345,LOC107751633,LOC107696353,LOC107677343,LOC107573176)


Basic Information

Item Value
gene id cygb1
gene name cygb1,LOC107569691,LOC107741345,LOC107751633,LOC107696353,LOC107677343,LOC107573176
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2596687 ~ 2605411 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235056.1
TCAGCAGTAACTCTTCATCAGACTCTTGAGGAGACAGAATAAAGCCCCCGTCAggagcacacacacagctcaagGGTTTCTCAGCCAGCGTCTGGATGGAGGGAGACGGCGGCGTGGAGCTCACACAGAGTCCCGAGGCTCTGACCGAGGACGACGTGTGTGTGATCCAGGACACGTGGAGACCCGTCTACGAGAACCGAGAGAACGCCGGAGTGGCTGTGCTCATCAGGTTTTTCTCGAACTTCCCGACGGCGAAGCAGTACTTCGATCAGTTTCGTGACATGCAGGACCCCGAGGAGATGAAGCAGAGCATCCAGCTGAAGAAACACGGGCTGCGGGTCATGAACGCCCTCCACTCGCTGGTGGAAAACCTGCGCGACGGAGACAAACTCAACACCATCTTCCAGCAGATGGGCAAATCGCACGCTCTCAGACACAAAGTGGATCCGGTTTACTTCAAGATTCTGGCTGGAGTGATTCTGGAGGTGCTGGTGGAAGCTTTCCCACAATGCTTCGGTCCAGCATCGGTGCAGAGCGCGTGGTCTAAACTCCTGGGCGTCCTGCACTGGCAGATGAACAAAGTCTACGCCGAAGTCGGCTGGGAATCCATCAAAACCTCCGCAAAGTGAAGGAGGGAACATATGCAGAATTATACGAACTAAACCAAAGATTATTACAGTTGTGTCGTgtatatttgaaagaaatagaCGCAGTAGAGAATGAAGAGAAAACGAGACGATGTTTTATAAATGTCGATGGCTATTTTATCTGGACTTTATCGATGTCAGATCCCTAGCAACTGTTATTGAGCTCAGATAATAAACACGCATATAAATCAGAGCAGAAATCTCGAGCTCTCTGCGCTCCGTCTcccattaaatatttacacatactcCAGATAAACCACGGGCCGGTACACAAACACGACCTCCGTCGGatacaaaaatgtgcatttctgGTGAAGCTCGGGTCTCTGCCGGAGCGTTAGATAAATACCCGGCTCATCTGAAGCGGATGTTTCTGATAGAGACGAGTGCTTTTGTATCGGCCGCTTCCTCTGCGTGCTGTGAGCAAAGCGAGTAGAAAGGACTCTTCTGTGCTACTAGAGCAGCTAAACTCATTTCTTTTTGTACTTATTCGAATGTTTTGTACATGTAAAATAACCACTGATTCAGAAATAAActctgaaacattaaagaaataaa

Function

symbol description
cygb1 Enables nitrite reductase activity and oxygen binding activity. Acts upstream of or within response to cadmium ion. Predicted to be located in cytoplasm. Is expressed in several structures, including blood; brain; digestive system; heart; and kidney. Orthologous to human CYGB (cytoglobin).

NR:

description
PREDICTED: cytoglobin-1

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0046686 response to cadmium ion biological_process
GO:0005737 cytoplasm cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235056.1 True 1205 mRNA 0.49 3 2596687 2605411

Neighbor

gene id symbol gene type direction distance location
LOC122341565 fbf1,LOC107751622 coding downstream 18348 2565436 ~ 2578339 (-)
LOC122341573 sphk1,LOC107741344,LOC107677335,LOC107751628,LOC107696311 coding downstream 34537 2542845 ~ 2562150 (-)
LOC122341600 LOC107567216,LOC107677333,LOC107741355,LOC107696343,LOC107751630 coding downstream 83385 2509235 ~ 2513302 (-)
rtbdn zgc:109949,LOC107741352,LOC107677336,LOC107567222,LOC107696350,LOC107568146 coding downstream 161152 2427945 ~ 2435535 (-)
hook2 hook2,LOC107677331,LOC107696339 coding downstream 205576 2374613 ~ 2391111 (-)
LOC122341599 LOC107751358 coding upstream 59941 2665352 ~ 2668367 (-)
LOC122341581 NA coding upstream 66246 2671657 ~ 2674787 (-)
LOC122341582 LOC107696344,LOC107565151,LOC107672900 coding upstream 73123 2678534 ~ 2687338 (-)
LOC122341577 LOC107696344 coding upstream 94955 2700366 ~ 2705732 (-)
LOC122341579 NA coding upstream 100346 2705757 ~ 2709504 (-)
G16464 NA non-coding downstream 6625 2589789 ~ 2590062 (-)
G16453 NA non-coding downstream 8827 2584894 ~ 2587860 (-)
G16440 NA non-coding downstream 81026 2514767 ~ 2515661 (-)
G16413 LOC107393734 non-coding downstream 213609 2382153 ~ 2383078 (-)
G16403 LOC107678214,LOC107706618,LOC107581313 non-coding downstream 232118 2305249 ~ 2364569 (-)
G16467 NA non-coding upstream 649 2606060 ~ 2606294 (-)
G16475 NA non-coding upstream 40480 2645891 ~ 2646750 (-)
G16753 NA non-coding upstream 664665 3270076 ~ 3271309 (-)
G16780 NA non-coding upstream 869914 3475325 ~ 3525238 (-)
G16779 NA non-coding upstream 897597 3503008 ~ 3526848 (-)
LOC122341591 NA other downstream 112457 2479128 ~ 2484230 (-)
G16421 LOC107572279,LOC107572278,LOC107668191,LOC107569684,LOC107574181,LOC107574114 other downstream 146484 2444068 ~ 2450203 (-)
LOC122341602 junbb,LOC107741351,LOC107567221,LOC107568144,LOC107696348,LOC107726104 other downstream 173141 2333556 ~ 2423546 (-)
trir c12h19orf43,LOC107677344,LOC107575051,LOC107567214 other downstream 222600 2314559 ~ 2374087 (-)
G16402 ubn2b,LOC107567211,LOC107677340,LOC107741349,LOC107696333 other downstream 234288 2303327 ~ 2362399 (-)
nup85 nup85,LOC107677339,LOC107569694,LOC107696313,LOC106601803 other upstream 26371 2631782 ~ 2640091 (-)
G16478 NA other upstream 44431 2649842 ~ 2654030 (-)
LOC122333478 LOC107695702,LOC107724673,LOC107601588,LOC107553654,LOC107716264,LOC107673211 other upstream 709341 3314752 ~ 3319186 (-)
LOC122341810 pctp,LOC107710979,LOC107695691,LOC107718942,LOC107567557,LOC107579518 other upstream 868033 3473444 ~ 3483449 (-)
LOC122341931 LOC107673185,LOC107720837,LOC107573119 other upstream 1242569 3847980 ~ 3863851 (-)

Expression


Co-expression Network