trir (c12h19orf43,LOC107677344,LOC107575051,LOC107567214)


Basic Information

Item Value
gene id trir
gene name c12h19orf43,LOC107677344,LOC107575051,LOC107567214
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2314559 ~ 2374087 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU24417
CGCAGATGAAATGAAGTATGGCGGAGCGACGCTAAAATACAACAAACCTGTGCGAAAAACATCGGGACAAAACCACGAAATCCTGCCGATTCACGCTCAATCCGGCCGGTGTGCGATCACGAACACGCTCGCTCCCGCGGCTCGACAACCGCGCGCTTTCTGTTCGTCGACGGCGGTGTTTTTGTTTCGCCGCGACGCTTCACGATCCCGCAACGGGGCGAGCTAACGtattattctttcattttcacCTGTATTACGCGTGTgcgcatttaaaatacatgcgagttttgttttttattcattaaaccgCAAGCCGTGGCTTCGGTGCAGAAATAAGAACACCGCGGGAGTGAATgtgaaggctgtatttattaCTTCACCGAACGGTAAAACGATGGAGAAAAAGCAGCATAAATCTGACAAACATCACcgccatcatcatcatcaccatcaccaccaccaccagtcctccagcagcagcagcagcggagTCCGGCGGCAACAGCCCGGCTCCCAGGGCGCCCAAAGC
>XM_043235057.1
CGCACCCGGGAGCGGACCGCAGATGAAATGAAGTATGGCGGAGCGACGCTAAAATACAACAAACCTGTGCGAAAAACATCGGGACAAAACCACGAAATCCTGCCGATTCACGCTCAATCCGGCCGGTGTGCGATCACGAACACGCTCGCTCCCGCGGCTCGACAACCGCGCGCTTTCTGTTCGTCGACGGCGGTGTTTTTGTTTCGCCGCGACGCTTCACGATCCCGCAACGGGGCGAGCTAACGtattattctttcattttcacCTGTATTACGCGTGTgcgcatttaaaatacatgcgagttttgttttttattcattaaaccgCAAGCCGTGGCTTCGGTGCAGAAATAAGAACACCGCGGGAGTGAATgtgaaggctgtatttattaCTTCACCGAACGGTAAAACGATGGAGAAAAAGCAGCATAAATCTGACAAACATCACcgccatcatcatcaccatcaccaccaccaccagtcctccagcagcagcagcggggAGTCCGGCGGCAGCAGCCCGGCTCACGGGGCGCCCAAAGCGGCCAACGCCTTCGCCAACGACGGCAGCTTCATGGAGCTCTTTAAGAAgaagatggaggaggaggagaagaggaagagagagggcGAGGGCGAGGAGAAGACGAAGAGCTCTGCTGCGGCTCAGGACAAGAAGCCGCTAAGCGCGAGCAGCTTTGTGGGCAAGCGGAGGGGAGGCGCGAGACTGGCCCTCAAGACCGGGATGGTGGCCAAGAAACAGAAACTCGACTCCGAGgtgGAGGCTGGCAAAGGAGACGCCTGGACTAAATACATGGCAGAAGTGAAAAAGTATAAAGCGCATCAGTGTGGAGACGACGATAAGACCAGGCCGCTGGTCAAATAGACTGAACCGCTTCCTGTGGAGACGGGCGTCACTGCCATTCACTGTCTGTCCTTCTCCCTCAGCTTGAGTTGACCCCGTGTTTGCCCGTTCGGTGGATTCCGGTTCTTTTTGAGTCGTTATGATTTAGACCGATCTCGTTCACCTCGTTGATATTTTGTACTCGACGTGTTTGCTACTTGAATGTCACCCGATGAAGATTGAGGATGATGAATTAAACTCACAGTACCACA

Function

NR:

description
PREDICTED: uncharacterized protein C19orf43 homolog isoform X1

GO: NA

KEGG:

id description
K01149 TRIR; telomerase RNA component interacting RNase

RNA

RNA id representative length rna type GC content exon number start site end site
TU24417 False 529 lncRNA 0.49 2 2314559 2374070
XM_043235057.1 True 1112 mRNA 0.53 3 2371688 2374087

Neighbor

gene id symbol gene type direction distance location
LOC122341666 NA coding downstream 24197 2270598 ~ 2290362 (-)
mcoln1b mcoln1b,LOC107672921,LOC107755617 coding downstream 61111 2243891 ~ 2253448 (-)
wu:fb95e10 LOC107672920,LOC107563751,LOC107755615,LOC107696329 coding downstream 76313 2212166 ~ 2238246 (-)
engl LOC107755613,LOC107563770,LOC107575003 coding downstream 137606 2165727 ~ 2176953 (-)
si:ch211-106h11.1 LOC107755611,LOC107672936,LOC107563749 coding downstream 159531 2148296 ~ 2155028 (-)
hook2 hook2,LOC107677331,LOC107696339 coding upstream 526 2374613 ~ 2391111 (-)
rtbdn zgc:109949,LOC107741352,LOC107677336,LOC107567222,LOC107696350,LOC107568146 coding upstream 53858 2427945 ~ 2435535 (-)
LOC122341600 LOC107567216,LOC107677333,LOC107741355,LOC107696343,LOC107751630 coding upstream 135148 2509235 ~ 2513302 (-)
LOC122341573 sphk1,LOC107741344,LOC107677335,LOC107751628,LOC107696311 coding upstream 168758 2542845 ~ 2562150 (-)
LOC122341565 fbf1,LOC107751622 coding upstream 191349 2565436 ~ 2578339 (-)
LOC122341671 NA non-coding downstream 48928 2262671 ~ 2265631 (-)
G16393 NA non-coding downstream 74114 2239298 ~ 2240445 (-)
LOC122342126 NA non-coding downstream 174200 2136069 ~ 2140359 (-)
G16385 NA non-coding downstream 188841 2125316 ~ 2125718 (-)
G16217 NA non-coding downstream 312988 2001274 ~ 2001571 (-)
G16413 LOC107393734 non-coding upstream 8066 2382153 ~ 2383078 (-)
G16440 NA non-coding upstream 140680 2514767 ~ 2515661 (-)
G16453 NA non-coding upstream 210807 2584894 ~ 2587860 (-)
G16464 NA non-coding upstream 215702 2589789 ~ 2590062 (-)
G16467 NA non-coding upstream 231973 2606060 ~ 2606294 (-)
pkn1b LOC107672927,LOC107755614,LOC107742419 other downstream 104326 2182526 ~ 2210233 (-)
zc3h7ba LOC107563727,LOC107672930,LOC107722838,LOC107572808 other downstream 314085 1788245 ~ 2000474 (-)
LOC122333107 NA other downstream 464279 1846692 ~ 1850280 (-)
G16172 NA other downstream 662193 1620964 ~ 1652366 (-)
LOC122330455 kdelr3,LOC107731665,LOC107563718,LOC107679478,LOC107674488 other downstream 1130971 1164316 ~ 1183588 (-)
G16421 LOC107572279,LOC107572278,LOC107668191,LOC107569684,LOC107574181,LOC107574114 other upstream 69981 2444068 ~ 2450203 (-)
LOC122341591 NA other upstream 105041 2479128 ~ 2484230 (-)
nup85 nup85,LOC107677339,LOC107569694,LOC107696313,LOC106601803 other upstream 257695 2631782 ~ 2640091 (-)
G16478 NA other upstream 275755 2649842 ~ 2654030 (-)
LOC122333478 LOC107695702,LOC107724673,LOC107601588,LOC107553654,LOC107716264,LOC107673211 other upstream 940665 3314752 ~ 3319186 (-)

Expression


Co-expression Network