rtbdn (zgc:109949,LOC107741352,LOC107677336,LOC107567222,LOC107696350,LOC107568146)


Basic Information

Item Value
gene id rtbdn
gene name zgc:109949,LOC107741352,LOC107677336,LOC107567222,LOC107696350,LOC107568146
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2427945 ~ 2435535 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235049.1
gagagagagagagagagagggaggaggaggcGTTGTCATCGAGATGTCCTTCGTCTACAGCTCCAggaaaagagtgtgtgtggatcAGAGCGAGAGCATCACAGAAGCTGCTGCACTCCTCCAGAATCAGCTGAAAGGTAAACGCAGGAGAAGATGGGCGTGTCTAAGGTTCTGCTCGGCCTCGCCCACCTCGCGAGCCTATTGGCCGCCGCTGTGATGAGTCACGAGGGGGCGTGTCTGCGGGACGGGAGGCACAAAGCCACGCCCAGCCCGGAGCCTCACCTCAAGCAGTGCTCGCTCTACACGGAGAACTCGTGTTGTTCAGAGAAGGATGTCCAGGATCTGTCCGGCTCTGTGTCCGCCGTGGACAACTCTCACTGGGACAAGTGCGGCGTCCTCAGCCCTCTCTGCGAGTCCTTCCTGAAGCGTGTCGTCTGTTTTTACCGCTGTTCTCCCGATGCTGCCCGCTGGCCACACCCCCACCGTGACTCCTCCCTGAAGGCGGTGCCTCTGTGTCACAGCTTCTGCAGAGACTGGTACGAGGCCTGTAAAATGGACATGACATGTGCTCGGGACTGGAGCACCGACCCAAGCGGACAGAACTGCAGCGGCGGATGTGTGCCGTACCAACAGATGTACCAGCACGGCCGAGACCTCTGCGAGAGTCTTTGGGGAGATGCGTTCATGACGGTGGAAGACGACCCCGGGGAGGAAGACGGTGTCGAAGGCCACAGCTGCGGCTGCCTGACCCTCAGCCCTTCCGATCGAGAGGTGATCGCCGCTCTGAGGGTTCAGGAAGGAGACCCTGAAGAGCTGGACACCACCAAGAGCGGCCTGCCGCAGTACAGAGCTCCCTGTCCCCCCGCGGGGCCCCAGGCGCCGGCCCCGCAGGCCCGGAGGAGCAACGCCGTCCTGCGCAAGCGCTCCGTCCTCGCCAGCGACATGGAGGGCAGCGGGAGCGGCTTCTGAGAGAGATGCTCGCTGAGGAGCGTTTTATCTTACCAGTCGGGTTTACTGTAATCGGTTTCTACAGTAACGCAGCCCGTAGACTAAAGCTACTTCGGTATCATCAAATCCCGCTTGTTTTAACCGGTTTAAGGTAACATCAAAAATTGAATTTAGGTCCgaataacactttacaataaggtttccATTGCTGGCGTTAGTTAACCACGTCGATAAACATAAACGAGCGACGCTTGTTTCgctaatttaaatttatgtGAATTTAAGCATTAGTTTTATCGTTGCTGCACCGCGAACTGACATTAAcgaagattaataaatgctgtaataaaaatatgctagTTCCACATTATAAAGTATAGGCTATACACAAATACAACGAGAGGGTAAGCAACAAGATAGATTAAATGTTATGATGTAATTTTGTATAGGATTCGGGAAAGTCAAGTCGAGGCTGTGCTTTTCCCGCTATTTTCCCCACTGTTGTCATTTTAGCCGCTAACTACAGAGCGCTAGCGGGCTAGTTTGGTTCGTGTGTAGGCTAGTTTTAGCAATCGGTCCTGTTCCTAATTAAAAGATTCCCTCTTTATTGCGTCCGCACACCTTGAAGCGTGgagcttattgtaaagtgtgaGGCTAGCGAATTTTCCCGTTTCCGTTACGTCGATAAAAACGGCTTTCTCCGGTGCAGCCGCTAGCTACGTTAAAGCACTTCGTAACATTAGCATTTCCGGCTCACCTTAAAGTTAAACGGCGCTGTCGTCGATTGTTTCTTTGGCTGTGCTGTGGCAGTCTACTATCTCGTAATCGGTGTCGTCTCGGTCGTCCGTTACACAGTTTATCCGTGCGTCGCGTTCATTTTTTGCGTGTTTTGAAAACATCACCCAGCATTTACACTGACGTCTAAAAATAGCtgtaaagggggaaaaaaacgagaggatgctgtaaaatgtgtttgaatATAGAACGAGCGTAGGACTAATCGCTGGCCGTTTTCGCGGGTTTTGTTTTGATTGGATGAAAATGGCGGCGCGTCACTGAGCCACGTGACGTTCCGCGACCGCAGCCAATAAACAAACGTGTTTCTATCCTGATCTCcaattcatgaataaataaaactggacTTCGTTTGCTCTTTTAAA

Function

NR:

description
PREDICTED: riboflavin-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235049.1 True 2108 mRNA 0.52 6 2427945 2435535

Neighbor

gene id symbol gene type direction distance location
hook2 hook2,LOC107677331,LOC107696339 coding downstream 36834 2374613 ~ 2391111 (-)
LOC122341596 slc25a38a,LOC107572806,LOC107745513,LOC107672904,LOC107751976 coding downstream 109898 2316014 ~ 2318047 (-)
LOC122341666 NA coding downstream 137583 2270598 ~ 2290362 (-)
mcoln1b mcoln1b,LOC107672921,LOC107755617 coding downstream 174497 2243891 ~ 2253448 (-)
wu:fb95e10 LOC107672920,LOC107563751,LOC107755615,LOC107696329 coding downstream 189699 2212166 ~ 2238246 (-)
LOC122341600 LOC107567216,LOC107677333,LOC107741355,LOC107696343,LOC107751630 coding upstream 73700 2509235 ~ 2513302 (-)
LOC122341573 sphk1,LOC107741344,LOC107677335,LOC107751628,LOC107696311 coding upstream 107310 2542845 ~ 2562150 (-)
LOC122341565 fbf1,LOC107751622 coding upstream 129901 2565436 ~ 2578339 (-)
cygb1 cygb1,LOC107569691,LOC107741345,LOC107751633,LOC107696353,LOC107677343,LOC107573176 coding upstream 161152 2596687 ~ 2605411 (-)
LOC122341599 LOC107751358 coding upstream 229817 2665352 ~ 2668367 (-)
G16413 LOC107393734 non-coding downstream 44867 2382153 ~ 2383078 (-)
G16403 LOC107678214,LOC107706618,LOC107581313 non-coding downstream 63376 2305249 ~ 2364569 (-)
G16401 LOC107696333,LOC107741349,LOC107749601,LOC107575050,LOC107575170 non-coding downstream 69780 2299037 ~ 2358165 (-)
G16400 NA non-coding downstream 72478 2296107 ~ 2355467 (-)
LOC122341603 NA non-coding downstream 107623 2302189 ~ 2320322 (-)
G16440 NA non-coding upstream 79232 2514767 ~ 2515661 (-)
G16453 NA non-coding upstream 149359 2584894 ~ 2587860 (-)
G16464 NA non-coding upstream 154254 2589789 ~ 2590062 (-)
G16467 NA non-coding upstream 170525 2606060 ~ 2606294 (-)
G16475 NA non-coding upstream 210356 2645891 ~ 2646750 (-)
LOC122341602 junbb,LOC107741351,LOC107567221,LOC107568144,LOC107696348,LOC107726104 other downstream 4399 2333556 ~ 2423546 (-)
trir c12h19orf43,LOC107677344,LOC107575051,LOC107567214 other downstream 53858 2314559 ~ 2374087 (-)
G16402 ubn2b,LOC107567211,LOC107677340,LOC107741349,LOC107696333 other downstream 65546 2303327 ~ 2362399 (-)
pkn1b LOC107672927,LOC107755614,LOC107742419 other downstream 217712 2182526 ~ 2210233 (-)
zc3h7ba LOC107563727,LOC107672930,LOC107722838,LOC107572808 other downstream 427471 1788245 ~ 2000474 (-)
G16421 LOC107572279,LOC107572278,LOC107668191,LOC107569684,LOC107574181,LOC107574114 other upstream 8533 2444068 ~ 2450203 (-)
LOC122341591 NA other upstream 43593 2479128 ~ 2484230 (-)
nup85 nup85,LOC107677339,LOC107569694,LOC107696313,LOC106601803 other upstream 196247 2631782 ~ 2640091 (-)
G16478 NA other upstream 214307 2649842 ~ 2654030 (-)
LOC122333478 LOC107695702,LOC107724673,LOC107601588,LOC107553654,LOC107716264,LOC107673211 other upstream 879217 3314752 ~ 3319186 (-)

Expression


Co-expression Network