RNA id: XM_043235049.1


Basic Information

Item Value
RNA id XM_043235049.1
length 2108
RNA type mRNA
GC content 0.52
exon number 6
gene id rtbdn
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2427945 ~ 2435535 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagagagagagagagagagggaggaggaggcGTTGTCATCGAGATGTCCTTCGTCTACAGCTCCAggaaaagagtgtgtgtggatcAGAGCGAGAGCATCACAGAAGCTGCTGCACTCCTCCAGAATCAGCTGAAAGGTAAACGCAGGAGAAGATGGGCGTGTCTAAGGTTCTGCTCGGCCTCGCCCACCTCGCGAGCCTATTGGCCGCCGCTGTGATGAGTCACGAGGGGGCGTGTCTGCGGGACGGGAGGCACAAAGCCACGCCCAGCCCGGAGCCTCACCTCAAGCAGTGCTCGCTCTACACGGAGAACTCGTGTTGTTCAGAGAAGGATGTCCAGGATCTGTCCGGCTCTGTGTCCGCCGTGGACAACTCTCACTGGGACAAGTGCGGCGTCCTCAGCCCTCTCTGCGAGTCCTTCCTGAAGCGTGTCGTCTGTTTTTACCGCTGTTCTCCCGATGCTGCCCGCTGGCCACACCCCCACCGTGACTCCTCCCTGAAGGCGGTGCCTCTGTGTCACAGCTTCTGCAGAGACTGGTACGAGGCCTGTAAAATGGACATGACATGTGCTCGGGACTGGAGCACCGACCCAAGCGGACAGAACTGCAGCGGCGGATGTGTGCCGTACCAACAGATGTACCAGCACGGCCGAGACCTCTGCGAGAGTCTTTGGGGAGATGCGTTCATGACGGTGGAAGACGACCCCGGGGAGGAAGACGGTGTCGAAGGCCACAGCTGCGGCTGCCTGACCCTCAGCCCTTCCGATCGAGAGGTGATCGCCGCTCTGAGGGTTCAGGAAGGAGACCCTGAAGAGCTGGACACCACCAAGAGCGGCCTGCCGCAGTACAGAGCTCCCTGTCCCCCCGCGGGGCCCCAGGCGCCGGCCCCGCAGGCCCGGAGGAGCAACGCCGTCCTGCGCAAGCGCTCCGTCCTCGCCAGCGACATGGAGGGCAGCGGGAGCGGCTTCTGAGAGAGATGCTCGCTGAGGAGCGTTTTATCTTACCAGTCGGGTTTACTGTAATCGGTTTCTACAGTAACGCAGCCCGTAGACTAAAGCTACTTCGGTATCATCAAATCCCGCTTGTTTTAACCGGTTTAAGGTAACATCAAAAATTGAATTTAGGTCCgaataacactttacaataaggtttccATTGCTGGCGTTAGTTAACCACGTCGATAAACATAAACGAGCGACGCTTGTTTCgctaatttaaatttatgtGAATTTAAGCATTAGTTTTATCGTTGCTGCACCGCGAACTGACATTAAcgaagattaataaatgctgtaataaaaatatgctagTTCCACATTATAAAGTATAGGCTATACACAAATACAACGAGAGGGTAAGCAACAAGATAGATTAAATGTTATGATGTAATTTTGTATAGGATTCGGGAAAGTCAAGTCGAGGCTGTGCTTTTCCCGCTATTTTCCCCACTGTTGTCATTTTAGCCGCTAACTACAGAGCGCTAGCGGGCTAGTTTGGTTCGTGTGTAGGCTAGTTTTAGCAATCGGTCCTGTTCCTAATTAAAAGATTCCCTCTTTATTGCGTCCGCACACCTTGAAGCGTGgagcttattgtaaagtgtgaGGCTAGCGAATTTTCCCGTTTCCGTTACGTCGATAAAAACGGCTTTCTCCGGTGCAGCCGCTAGCTACGTTAAAGCACTTCGTAACATTAGCATTTCCGGCTCACCTTAAAGTTAAACGGCGCTGTCGTCGATTGTTTCTTTGGCTGTGCTGTGGCAGTCTACTATCTCGTAATCGGTGTCGTCTCGGTCGTCCGTTACACAGTTTATCCGTGCGTCGCGTTCATTTTTTGCGTGTTTTGAAAACATCACCCAGCATTTACACTGACGTCTAAAAATAGCtgtaaagggggaaaaaaacgagaggatgctgtaaaatgtgtttgaatATAGAACGAGCGTAGGACTAATCGCTGGCCGTTTTCGCGGGTTTTGTTTTGATTGGATGAAAATGGCGGCGCGTCACTGAGCCACGTGACGTTCCGCGACCGCAGCCAATAAACAAACGTGTTTCTATCCTGATCTCcaattcatgaataaataaaactggacTTCGTTTGCTCTTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24423 lncRNA downstream 4399 2415859 ~ 2423546 (-) False LOC122341602
TU24426 lncRNA downstream 4399 2415859 ~ 2423546 (-) True LOC122341602
XR_006250472.1 lncRNA downstream 7398 2393401 ~ 2420547 (-) False LOC122341602
TU24438 lncRNA downstream 44867 2382153 ~ 2383078 (-) True G16413
TU24417 lncRNA downstream 53875 2314559 ~ 2374070 (-) False trir
TU24480 lncRNA upstream 79232 2514767 ~ 2515661 (-) True G16440
TU24497 lncRNA upstream 149359 2584894 ~ 2587860 (-) True G16453
TU24517 lncRNA upstream 154254 2589789 ~ 2590062 (-) True G16464
TU24520 lncRNA upstream 170525 2606060 ~ 2606294 (-) True G16467
TU24529 lncRNA upstream 210356 2645891 ~ 2646750 (-) False G16475
XM_043235024.1 mRNA downstream 36834 2374613 ~ 2391111 (-) False hook2
XM_043235023.1 mRNA downstream 36834 2374613 ~ 2391111 (-) True hook2
XM_043235057.1 mRNA downstream 53858 2371688 ~ 2374087 (-) True trir
XM_043235062.1 mRNA downstream 109898 2316014 ~ 2318047 (-) True LOC122341596
XM_043235061.1 mRNA downstream 109899 2316016 ~ 2318046 (-) False LOC122341596
XM_043235050.1 mRNA upstream 43593 2479128 ~ 2484230 (-) False LOC122341591
XM_043235054.1 mRNA upstream 43593 2479128 ~ 2484224 (-) False LOC122341591
XM_043235051.1 mRNA upstream 43593 2479128 ~ 2484224 (-) False LOC122341591
XM_043235053.1 mRNA upstream 43593 2479128 ~ 2484224 (-) False LOC122341591
XM_043235055.1 mRNA upstream 43593 2479128 ~ 2484224 (-) False LOC122341591
TU24428 other downstream 4399 2333556 ~ 2423546 (-) False LOC122341602
TU24410 other downstream 65546 2303327 ~ 2362399 (-) True G16402
XR_006250468.1 other downstream 225376 2184445 ~ 2202569 (-) False pkn1b
TU24084 other downstream 427616 1788245 ~ 2000329 (-) False zc3h7ba
TU24448 other upstream 8533 2444068 ~ 2450203 (-) True G16421
XR_006250471.1 other upstream 43593 2479128 ~ 2484224 (-) True LOC122341591
XR_006250470.1 other upstream 196247 2631782 ~ 2640091 (-) False nup85
TU24533 other upstream 214307 2649842 ~ 2654030 (-) True G16478
TU24952 other upstream 879903 3315438 ~ 3319064 (-) False LOC122333478

Expression Profile