RNA id: XM_043235054.1


Basic Information

Item Value
RNA id XM_043235054.1
length 2172
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC122341591
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2479128 ~ 2484230 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAAGCGTTCAGTGGAGAAGGAAGAGAAACATCAAAGAAGGAGTTTTGAGGAATTGGTTTCCAAGCAGACAGCGGATCTTTGTGGATCTCAAGAAGAAGATCCTCAAGAGATCATCTAAAAAACTTGTGGCATCTAAAGTGTCAAGCGAAAGGTGAAGAAGCTACAATCACTGAActgagggaggaagaggagcagacGACGATAAAGGAGAAGCTGAAGCTCAGCAGGCACGTCTCAACTGTTTCAGACACAATCAAAGACACGGATGACATGATAAAAGACAATGACATCTGCTTTCTGAAGGAGTTTCCAATCTCAAAAGAAACTGGAGTGATCTGCTGGTGTTTCTGGACTCACTGCTTCTGTCAATTCCACTTCAGTTCTGACCCTGAATCTTCTTCCAGAGTCCAGATCTCATCACAGCCGGATCCACAGACACCTTCAGGAGCTTTGATTCATGTTCCACGATACTTGGGCAACCTGTCCTTCAGAGACCGGAGGGAGATGGAGGACACTGTCCAGAACACTCCTGTGActctggatccaaacacagctcATCCACGTCTCGTCGTGTCTGAAGATCTGACCAGCGTGAGATTCATGGAGCACGAACAACCTCTTCCTGATAATCCTGAGAGATTTGATAAATATTACTGTGTCCTGGGCTCACAGGGTTTTAACTCAGGAACACACTTCTGGGACGTGGAGGTCAAAGAGAATCGATGGTGGATACTTGGAGTAACTACAGCATCGAACGAAAGGAAAGGGTGTGTGTTCTTTGACAGTAATGCGTGGTATGTGCAGAACAGAATGTCTACACTCACTAGTTTTGGTATTAAACAGGATCTCgactgtgtgagagtgtgtctggaCTATGAAGGAGGAACGCTGTCTTTCTCTGATCCTGCTACtaacacacatctacacacaatCACAACCACCTTCACCGACACCATCTTGCCGTTCTTCTGTTGTTCATCCTCTCTGAGGATCTTACCACCAATTGGAGACTGCGCCCTTAGTGGACGTCCGAAGACGCATCTATAGAGGGTATGAATTGACGTCATTGTCCCACGTGAACAATCAGGTACACGCCCCCCGAGTGGCGAAACGTTCAGAAAAAATGGCAGGCCGTAATAACAGCAGCTGCCAGTATAACTGCAAATGATCagcttaaattaaatttagttgGACTTGACAGTAGCCCTAACAACCTGCCAAACGAGCAGTGGACGCCGTATATATTTCCCGCCATATATACGTACGCCGCTGAGGAAGTACACCAAGGAAAGTTCAAAAGCCTACAAAAGCCTTGTTGACTGCacaactttttaacattttagacGTGTTTTTGTAGATTTCATGCTGCACACTAATGCCGTCACTCAGTCTTTTTGCCTCTTAGTGGGCGGGGCCACACTCACTCCAGCTGATGATGTCATGTACATACCCTCTATTGATTCGTTCCTGGAAATCCGGCATCTTTTGAAATGGCGGGACACAGGAGttcggaggagagagagggaagagtTGTAGTTGTCTTTGTGGTGTGCTGTGAACTTTGTGCAGTAACACAGTGTTGAAACCCTTTTTCGTGTTAAATTAGTTATGTACagaacttaatattttgttgttgaaatCAATTAGCCAGTTTTTTCACCTGTTAGGTGAGCTGGCAAATGCaccgttatttatttatctattttttctATGTATTGTGAATAGTCTGTCTCCTGGTATTAAGGCTGTGTGCCggttttctttattataaatatcattttcaaccgttcacagcaaaaaaaaaaatggaactaagtcttttaaatctcaaatactaaaaaatgcTAACTGTACTATAAAAAACAACCTTTGTCAGACCAACAAACTAACTTAGTTGTCTGAACAAAGAAGTGTCTGAATGTAGAAGGCTTtgtgagttcccagcatgcatagCAGCATGACTGAATTATGCAGTTATACTGTtggattattgttttgctgtttcctgacctttttgtttttgtatcatCACTGTTAGCTATTTGTTGTACTTTGATGGTATTGTATATGTCAGCATATGTTGatgtgcatacatatatatgtatttttatgtatatatgtgtgtgtatatatatctcctacattctcttttaaaataaatcctaTTATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24423 lncRNA downstream 55582 2415859 ~ 2423546 (-) False LOC122341602
TU24426 lncRNA downstream 55582 2415859 ~ 2423546 (-) True LOC122341602
XR_006250472.1 lncRNA downstream 58581 2393401 ~ 2420547 (-) False LOC122341602
TU24438 lncRNA downstream 96050 2382153 ~ 2383078 (-) True G16413
TU24417 lncRNA downstream 105058 2314559 ~ 2374070 (-) False trir
TU24480 lncRNA upstream 30543 2514767 ~ 2515661 (-) True G16440
TU24497 lncRNA upstream 100670 2584894 ~ 2587860 (-) True G16453
TU24517 lncRNA upstream 105565 2589789 ~ 2590062 (-) True G16464
TU24520 lncRNA upstream 121836 2606060 ~ 2606294 (-) True G16467
TU24529 lncRNA upstream 161667 2645891 ~ 2646750 (-) False G16475
XM_043235049.1 mRNA downstream 43593 2427945 ~ 2435535 (-) True rtbdn
XM_043235024.1 mRNA downstream 88017 2374613 ~ 2391111 (-) False hook2
XM_043235023.1 mRNA downstream 88017 2374613 ~ 2391111 (-) True hook2
XM_043235057.1 mRNA downstream 105041 2371688 ~ 2374087 (-) True trir
XM_043235061.1 mRNA downstream 161082 2316016 ~ 2318046 (-) False LOC122341596
XM_043235066.1 mRNA upstream 25011 2509235 ~ 2513302 (-) True LOC122341600
XM_043235032.1 mRNA upstream 58621 2542845 ~ 2562150 (-) True LOC122341573
XM_043235033.1 mRNA upstream 58621 2542845 ~ 2562147 (-) False LOC122341573
XM_043235034.1 mRNA upstream 58621 2542845 ~ 2561751 (-) False LOC122341573
XM_043235035.1 mRNA upstream 58621 2542845 ~ 2553931 (-) False LOC122341573
TU24448 other downstream 28925 2444068 ~ 2450203 (-) True G16421
TU24428 other downstream 55582 2333556 ~ 2423546 (-) False LOC122341602
TU24410 other downstream 116729 2303327 ~ 2362399 (-) True G16402
XR_006250468.1 other downstream 276559 2184445 ~ 2202569 (-) False pkn1b
TU24085 other downstream 478988 1984597 ~ 2000140 (-) False zc3h7ba
XR_006250470.1 other upstream 147558 2631782 ~ 2640091 (-) False nup85
TU24533 other upstream 165618 2649842 ~ 2654030 (-) True G16478
TU24952 other upstream 831214 3315438 ~ 3319064 (-) False LOC122333478
XR_006250494.1 other upstream 989220 3473444 ~ 3483449 (-) False LOC122341810
XR_006250503.1 other upstream 1367128 3851352 ~ 3863851 (-) False LOC122341931

Expression Profile