RNA id: XM_043235035.1


Basic Information

Item Value
RNA id XM_043235035.1
length 5014
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC122341573
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2542845 ~ 2562150 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATTAGTTCAGCTTGGATTAAAACAGGAAGTGCTGCCATGAATAAGTATCTGGACTTATGTGCGTTTACGTGATTAAACGTATAGCTATTGTCATTATAAATATctgtataatcatttttattatcacgctttataataatactaaacaaacaaacaaactaaatacaGAAAGCTGTAAAGGTTTCGTTCCCTCAGCAGTCAGCTGTGAAGTCTGTGTCGTTATGAAGGGAAGCGCTGTAGGTTAACGACGCCGTCAGAGGCTCCGGTGCTAATCTTAATCAGCCTCACTGAGCGAGCGCTGATGCTAGCGGGTGCGGGTGAACGTGGCCGTTGTTTCGTGGGTTTCCCAGCTCTGGCATCGATGCGCATGACATGGCACCCCGCAGGAGCTCGTTACAGCCCTCGGCCCCAGAGGATTCTGGGATACGGATGAAGCTCGGGGCTGAACGACCTCGTCCTCTTCTTCCTGCTCGATGTGAAGCGCTCAGGAAGCGGCGGAGATCGTTCGCTAACGCAGAAGGTCCTGATCTCACCGGCGGCAAACGACTCGAAGGCTTTTGAGCTGCTCGTTCTTTCAAATCTTTTCGTCGgtgTCTTGTTCTCGGAGATCCGTCGACCGCGTGGCGTGATGGTATTGGTCAATCCTCAGAGTGGGCGGGGCCAAGCAGTGGCTCTCTATAATGGCCACATTCAGAGGATGCTCACTGAGGCAGATATACCACATGAACTCTTCATCACAGAGCGGCAGAATCACGCGCGGGACCTGGTGAGGAGCGCAGACCTCACGCAGTGGGACGCTCTGGTCATTCTGTCTGGAGACGGGCTGCTGTTCGaggtagTGAACGGTCTAATGGACAGGCAGGATTGGGAAAGGGCCATCCAGACTCCTCTGGGGATCCTGCCCGGAGGTTCAGGAAACGCTCTGGCTGCGTCCGTCCATCACTACACGCGAGCGCCTCCGGTGTGCGGTGAAGATCTGCTGACCAGCTGTGGCTTTTTGCTCTGTAAGGGTGTGGTGTCTAAACTGGACCTGATCTCCATCCACCTGTCGTCCGGTGCCCGTCTCTTTTCCTTCCTGTCTCTAGCCTGGGGCTTTGTGGCCGACGTGGACATCGAGAGCGAGCAGTTCCGCCAGATCGGAGCTCTGCGCTTCATCCTCGGCACGCTGCTGCGCTTGGCCTCCTTACGGGTCTATCAGGGAAAACTGGCCTTCCTGCCAGCCGAAAACGAGTGCGGGTCGGACCCCGGGAGCTTTTCCCCCGCCGACAGCCGGCTGCCGGACCACCTGCTCGCCCCGCTGGAGCAGCCCGTCCCGCAGGACTGGACGCTGGTGGAGGAGAGGGAGTTCGTTCTGGTGCTCGCCATGTTCCAGTCACACCTTAGCGAGGACCTGCTGGCGGCTCCGGCCGCCCGTGCCGACGACGGGCTCATCCACCTGTTCTACGTGACGGAGGGCATCTCGCGCACCATGCTGCTGCGGCTCTTCCGGGCCATGCAGAGCGGGACGCACCTGGACTGCGGCTGCGCGCACCTGGTGTACCGGCGCGTCCGAGCGCTGAGGCTGGAGCCGCTGAGCGCCGCCGGGATCGTGACGGTGGACGGGGAGCGCGTGGAGTACGGGCCCGTGCAGGCACAGGTGCACAGAGGAGCCGCCCGCCTCATCTCCGCGTGAACCACCGACGACCGTTtaagggccagatttactaaacaagGAAAAGTAGTGTTGGAGCGCAATTCCTTAAACTTACTAACAACGAGCACAGTAAAGAACGCAGACACAGTCAGATAATTTCCGTAACAAACTGCGCAATCTTTAGGGGCGGGTTGAGGTGTAGATCATTTGTACGATTCCTGCAAATTGTGCAACTCCTAAAACCTCATCGTAAGGTCTACTAAATGGGGTAAATTAGCGTTAGAACGCAGTTCCATAAAAGCGCTGTACAATTAGTCGTATTCAATAGTCACGCACATTTTGTCGGTAAAGCTGGCTTTGTGATTAGTAGCAAATTTCTTCCATCACCTGCTCTGAAATGGAGAAAATGAGAACATGTTTTCACTTCGATCTCACTTCATAACGTCAGCTGAGTATTTTAACTAAATCCTTCTGTGAGACAATGCGGCTTAGATGTGGCAGAATAAGGCGCGCAACATATTTCGTAATATTTTAAGCGGCTATGAAGGCTAAGTTGATTAGCATTGCTTTATCATATAAAGATATATGCATGGTAATCGCAGCTTCTGCCTAATAGggatttaaatttgattattaGTGCACAATTAACGGCATCTCACGACTAATTAGTGCGTATTATTTGAGGTGGTTAATTCGTACAACCTCACTCGTACGATTTTGTACCATTTGTCTAAAGTCCAGTGGCcggtaggtttaggggcggggttaggtGCAGGTCGTACGAATTAATACAAATGAAGTGAGATCGTACGAATTAGGCTCTTCTTAAAACATGTACGAATTGCTGTGAGATTGGCGAAAATAACCGcctgctttttaaataatggcaTTAAAGAATACCGATAATCTGACGGGAGCAAACGTTATAAACTGAACGCTCTCTTCCCAAAATGGAAACTCATGCAAACGCATGTTCAATAAGgtcatgcataaaaataactgtGTCAATGACTTTTCCAATTCTTCAATGCGCGTCTTTAGTAAATTTTGATACTGTTTTAGAGCCAAAAGATGGTTTGTGCTGATGCAAGCTGTCAGTAAATCTGGCCTTTGAATGGGAAGACATTTACCTGAAGCAACACGGAAACCGCACAATAATCCCGACTGGCTGCCGTTAAACTTGAATTTAATGTTCGTTCGTTTGTTTTATTGAGGAATTGTAACTTTGAGTGAATCGAAACCAGGGGTCCACAAAATAGGAAATTGTATACTTGGTTATATTTTGTGGTAAGACGATTGACGGGTTCTACTTTAACACTGTTTGCTTGACGTAcatatgcataatttaaatacaaacctAAAAAACTgctaatttatgtaaaaaaaaaatattcgaatgttttgatttttgggATGAAATTTGAACTTGAGCAGGTTGGGAATAATCATTTTTGATGCTTGTTGCTTTTCAGCCCAAAAATTTTGCATTGAGAAAATGTACAAGTTTACATTAATTTTCCTGACAGTTAAACTAAACCGTagttttttaattgaaaaatagcACAATGAAAAATATCCATGTGATTTACGATATAAACTTGATTTTCTTTAcgcaaacaaatcaaataataaataaacattacatttgtattttcatcaccttttggggtgaaatatgaaCTAAGCAGGTTGCGAATCATTTTAGGGTCACACTTCACTccaaaaatcaaaagaaagaaaaaaagaaatgcatgaagTTGACTGTTACTTATACTGACTGTTAATTGCCGGTTTTGTGCAAAACATAACCTTTTATCGATTTTCTGTGGCTGAAGTATGAACTAAACAAATTGAGACTTCATCGTGTCTTGTGCATCCAAAAACACAACTTGGTGATACTGGTTTCATGATGGTCAAACGTGTTTTATCCTAAAAAGTAATCGAAAACATTCCCAACGCGAAGCTTCTTCATTTAACACAAAATCTGCTTCATTTTCTTCCTGCAGAGTGCAGTTCCTCATTTCTTTGTTTGGATTTTTGGAGTGAAATATGAGATTCTGTCAAACTCTGGTGAGTTTCGTGGTCTCTGATGCTGGAGTTTATGCTGCTGCGACGCACCAATCTTGATTTTCAGAAGTGCCAATGCTGCAAATGTGTAGttgtttatctttatttttctatgatataatttaatatcattatttaagAGCCGTTTGACtgtcagtgtgtgagtgtgtgtgtgtgtgtcatgaagCCTCACCAGCCGCCTACATCAATATATCTCAATATCAGCAGAGTCTGAAGGTTTTATTATGCCTGTTATAGATGAGccgttattaaatataaatactaaaatgaaaaacttaaatattttcctCCTAGccataaaaactgttttgctgTTATTAGATGTTTCTCTGTGTACCAAACATGCTGCCTTCAGATCCTTCTGGAAAATTAGTGTTTCATCAACTGCATACAAAGTAACTACTAAACACACAATCGTTGATACTGTAACGTTTTCAATGCCCTGtcgttgaaaacattttttcatgaatgtcacaataaatacatatacacacacatgaatgACATGTtcttaaaaagacacaaaatctGAGTCGGACATCATGCTCACGTTGATGAAAAGTTTAGAGACCGTAACCTTGACAGAAATCTTTAAAATCAATCGATAACACTTGCTGATGTTGTTTCGTCTCCAAAATGATGCCATTTACTGTGTGATGTCTTCAGTGAAAGGTTAAAGGTTAACACGTTTATTAAATGAGCATCCATAGCCAAAGCGGTTTGCTTCATTGTGttctaaaatttatttttgtgagtttaatatcattttagtATCATTTAGGCACTGAGGTACTGGGTTTTATAACAACCGGGTGATGTTAAACAATAGCACAATAGCTCAAACTATCAGTATGgggttttcttttacatttgcattctgTTCCTGTTGAACATTTTGTTACAGGCTTGTTCAGACCAACCAGCTGCGGACCAATGGACAGATTCAGGCTAACCCTGACTGAAAGGTTTAAAGCCATATAGAGCCTGTTGTGTTGATTAGTGTATGGATGAAACTTTCTAGTTTGTGAACCGAAGTTACTGAATCAGAGATGAAATTATGTACAATTCTGGGACTTTTGTTTTCTGCACAATACTATGTGACCAGAGGAGAACGATCGGAATAAAAGTGCTTTGATTTATTCgctaattaaaaatgtgcatatgatTGCAACTGTACTGTGACATTTAAATAGCATTCTCTATACTtgagataaatataaaaatatgttctatattttttcaaagttatacatttttatgaaaaagagaaataaaatttCAGATGGTaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24480 lncRNA downstream 27184 2514767 ~ 2515661 (-) True G16440
TU24423 lncRNA downstream 119299 2415859 ~ 2423546 (-) False LOC122341602
TU24426 lncRNA downstream 119299 2415859 ~ 2423546 (-) True LOC122341602
XR_006250472.1 lncRNA downstream 122298 2393401 ~ 2420547 (-) False LOC122341602
TU24438 lncRNA downstream 159767 2382153 ~ 2383078 (-) True G16413
TU24497 lncRNA upstream 30963 2584894 ~ 2587860 (-) True G16453
TU24517 lncRNA upstream 35858 2589789 ~ 2590062 (-) True G16464
TU24520 lncRNA upstream 52129 2606060 ~ 2606294 (-) True G16467
TU24529 lncRNA upstream 91960 2645891 ~ 2646750 (-) False G16475
TU24530 lncRNA upstream 91960 2645891 ~ 2646750 (-) True G16475
XM_043235066.1 mRNA downstream 29543 2509235 ~ 2513302 (-) True LOC122341600
XM_043235054.1 mRNA downstream 58621 2479128 ~ 2484224 (-) False LOC122341591
XM_043235019.1 mRNA upstream 11505 2565436 ~ 2578339 (-) True LOC122341565
XM_043235056.1 mRNA upstream 42756 2596687 ~ 2605411 (-) True cygb1
XM_043235027.1 mRNA upstream 77851 2631782 ~ 2640091 (-) True nup85
XM_043235028.1 mRNA upstream 77851 2631782 ~ 2640090 (-) False nup85
XM_043235065.1 mRNA upstream 111421 2665352 ~ 2668367 (-) True LOC122341599
XR_006250471.1 other downstream 58621 2479128 ~ 2484224 (-) True LOC122341591
TU24448 other downstream 92642 2444068 ~ 2450203 (-) True G16421
TU24428 other downstream 119299 2333556 ~ 2423546 (-) False LOC122341602
TU24410 other downstream 180446 2303327 ~ 2362399 (-) True G16402
XR_006250468.1 other downstream 340276 2184445 ~ 2202569 (-) False pkn1b
XR_006250470.1 other upstream 77851 2631782 ~ 2640091 (-) False nup85
TU24533 other upstream 95911 2649842 ~ 2654030 (-) True G16478
TU24952 other upstream 761507 3315438 ~ 3319064 (-) False LOC122333478
XR_006250494.1 other upstream 919513 3473444 ~ 3483449 (-) False LOC122341810
XR_006250503.1 other upstream 1297421 3851352 ~ 3863851 (-) False LOC122341931

Expression Profile