RNA id: XM_043235028.1


Basic Information

Item Value
RNA id XM_043235028.1
length 2199
RNA type mRNA
GC content 0.55
exon number 19
gene id nup85
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2631782 ~ 2640091 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCCAGGCGTCAGGGGTCCTTCAGGCTCACGGCGCTCGATTCTGATCGCCGAGTGTGTTGAATGTAGTTTAGATCGCACGGCGGTATAAAATTATACTTTCGCTATTATTAGGGAGGCTTTACTAACTCGGTGTCATGGAGGAGGTGGATGTAGAGCCCAGTACCACGCTCATTCCCGGCGCTGGGTTTCATCAGAAGCACCTGGGCTTCGAATGGGGTCCCGGAGATATGTTAGTGTATGAGACGAGCCACAAACTGCAAGGTCCGAGGTCCGCCGGCTGCCCGCTCGTTCACGTCGTGAGGAAAGACGAAGACATCTGCTCTCCCATCCTGCGCAAGCTCTTCAACGAGTCCCACCTCATCTTCGTAGGGCTGCAGAAAACCAAAGAGGACGCGCCCAGCAAAAACAAGAAGTCGCAGTTTGTGAGCATCAGCAAGAACTACAGGTCTGTGATCAGAGCGTGCATGGAGGAGCTGCAGCAGAACGCAGTTTCAGCACGAGACGGCTCTTTAGCATCGCAGTATGGAGATCAGGTCTCTATTCTCCTGGCCGTCGAGCTCATATGGAACTTGTGCGAGGTCCTCTTCATCGACGCCGCTCCAGCCGGGTCTCTGCTGCTGCACCTGCTGGACTGGGTGCGTCTGCACAAGTCGGACGTGGACTCGAGAGCGAGGGAGGTGTTAGGGAGCGACAGCCCCGCCGAGCATCAGTCCTACTGGGACGTGgtcATCAGTTTAGTCCTGCAGGGCCGAATGGATGAAGCTCGTCAGGTGCTCTCCAAACAGGCGTCTCTGCGAGCCGAGAGCAGCTCTGTGTTCAAACGCATGGACGGCCTGCTTCAGACCATGCCCATGTTTAACCCCACAGGAAGTCAAACGCTGACCGAGTTTGACGTCAAATGGAGACACTGGCACGAGGAGTGTGACCGCTGTCTCCAAGACAACACCTTCGCTAGCAACCGTCACCTGGAGACCGTCTGCAAGgTCCTGGTCGGGGATGAGGACACGTTACTGGAGCAGAAGGAGCTGCTGAGCACCTGGTATCACTTCCTGGTCACACGGCTGCTCTTCACTCACCCCACCATCAAACCGCCGGAGCTGCACTACTACGCTCAATCGAGCATGAACATGTTTCTGGGTCCGCGGGCGTCTCCGGAGCCTCTGGACATCATCCTGCTGTCGGCCTTCGAGTTCGACCTGCATCAGGTGATCAAGGACTGCAGCATCGCGCTCAATAACTGGTGGTTCGTGGCTCATCTGACAGACCTGCTGGACCACTGCAAACTTCTGCAGTCACACAACCTCCAttttgggTCTAATCTGCGTGAGTTTCTGGTCTTGGAGTACGCCTCGGGTCTCTTCACACATCACAGtctgTGGCAGCTGGCGGTGGATTACTTCGATCACTGTCCCGAGTTCGGTCGTGTGTATCTGGAGCTGCAGATCGAGAGAGTCCCGCTCGACACCGGGCGCAAAGCCGTTAAAGTCCTGCGGATCTGTGAGGACAGACAGATGAGTGAACAGGtgcgCAGCATCTGTAAGATCATGTCTAAGCGGGCTCTGAGGAACAACAGACTGGGATCTGCTCTGTCCTGGAGCATCAGGGCCAAAGACGCAGCGTTCGCTACACTCATCTCTGAGAGGTTTCTTCAGGATTACAGTAACAAAGGCTCCTTCGCGGATCTGGATTTGTTGGATAATCTGGGTCCTGCCATGCTGCTCAGTGACAGACTGACGTTTTTAGGAAAGTACCGTGAGTTTCACAGGCTTTACGGCGAGAAGCGTTTCTCCGAGGCGGCCCGACTGCTGCTGTCCCTCATGACGGCGAGGATCGCCCCGCGCAGCCTGTGGATGACCCTGCTGACCGACGCGCTGCCGCTGCTGGAGCAGAAAGAGgTGATCTTCTCGGTGGATCAGACGTATGAGCTCATGTCCTGTCTGGAGGAGCTGAACTCTGGGACCAAAGACTCGAACCAGACAGACCAGGATGAAGATTTTGAGTCCACGAAGACGGAGCTCCTGCGACTGGCTCTGGCCCGTAACCTCGCCATGGCCATCGTGAAAGAGGGAACAACAGAAACATGAATACATCCAGTCACTCACAGCTGTTTTCCAATCGCTCTGTGTCCTGTACATAATTCAGAAACTTGAGTAAAAACGTGACgtcttttataaaacattttccagtaTTTGCAAAAA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0051028 mRNA transport biological_process
GO:0031080 nuclear pore outer ring cellular_component
GO:0031965 nuclear membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24520 lncRNA downstream 25488 2606060 ~ 2606294 (-) True G16467
TU24517 lncRNA downstream 41720 2589789 ~ 2590062 (-) True G16464
TU24497 lncRNA downstream 43922 2584894 ~ 2587860 (-) True G16453
TU24480 lncRNA downstream 116121 2514767 ~ 2515661 (-) True G16440
TU24426 lncRNA downstream 208236 2415859 ~ 2423546 (-) True LOC122341602
TU24529 lncRNA upstream 5801 2645891 ~ 2646750 (-) False G16475
TU24530 lncRNA upstream 5801 2645891 ~ 2646750 (-) True G16475
TU24943 lncRNA upstream 629986 3270076 ~ 3271309 (-) True G16753
TU24980 lncRNA upstream 835235 3475325 ~ 3525238 (-) True G16780
TU24978 lncRNA upstream 862918 3503008 ~ 3526848 (-) True G16779
XM_043235056.1 mRNA downstream 26371 2596687 ~ 2605411 (-) True cygb1
XM_043235019.1 mRNA downstream 53443 2565436 ~ 2578339 (-) True LOC122341565
XM_043235033.1 mRNA downstream 69635 2542845 ~ 2562147 (-) False LOC122341573
XM_043235065.1 mRNA upstream 25262 2665352 ~ 2668367 (-) True LOC122341599
XM_043235041.1 mRNA upstream 31567 2671657 ~ 2674787 (-) True LOC122341581
XM_043235042.1 mRNA upstream 38444 2678534 ~ 2687338 (-) False LOC122341582
XM_043235043.1 mRNA upstream 38444 2678534 ~ 2684207 (-) True LOC122341582
XM_043235038.1 mRNA upstream 60276 2700366 ~ 2705732 (-) True LOC122341577
XR_006250471.1 other downstream 147558 2479128 ~ 2484224 (-) True LOC122341591
TU24448 other downstream 181579 2444068 ~ 2450203 (-) True G16421
TU24428 other downstream 208236 2333556 ~ 2423546 (-) False LOC122341602
TU24410 other downstream 269383 2303327 ~ 2362399 (-) True G16402
XR_006250468.1 other downstream 429213 2184445 ~ 2202569 (-) False pkn1b
TU24533 other upstream 9752 2649842 ~ 2654030 (-) True G16478
TU24952 other upstream 675348 3315438 ~ 3319064 (-) False LOC122333478
XR_006250494.1 other upstream 833354 3473444 ~ 3483449 (-) False LOC122341810
XR_006250503.1 other upstream 1211262 3851352 ~ 3863851 (-) False LOC122341931
TU25103 other upstream 1344577 3984667 ~ 3985667 (-) False LOC122340684

Expression Profile