RNA id: XM_043235043.1


Basic Information

Item Value
RNA id XM_043235043.1
length 4434
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC122341582
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2678534 ~ 2687338 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAAGGGTTTTTTAACGGGTTTGGAGATTAGCTCCTAACTGAAAACATGCTAGTTCAATCCCAGATACTCTGCTGAACTCCTCACACAGATCTGTCAAGACAGGGGGGCTGTTTTCATGTATGACTACAAGCTGTCTAGAGTGGCAGACATGAGTTGTGTATTCCTTATGTTTCTTGTTCATCTGGAGCTCCAGATATTTCAGGACCAAACTGAGGATGGACCTAGTGAGTGGACAGCCATCTCGTAACTCGCTGAAGCCGTCTGAAGCTCCTGGGATCATAagctctaaaatattattttccacTTTTTCCAAAGGAACTATATCTTTAATTAAGAttgtaatcattattatttgtctCTCAATATAccctttttctgtcttttttggcttttttttttgtctgtttttttagacTTTTGAATTGTTTCTGCAGTTTTGAGTATGCGTGAGAAGATGTCTTTTAAGAAGGTCCATTTGACTTTCTTTGGTCTTTCTGCAAAGGTTAAACAGTGACACGGGTCACGGATGTTGTTTTGGCTCCTTTTCTCTGGGAATAGCTCCAGTAGCAAATTAAGGCGTTTGGCCAGAACCGTAGTGAAAATCAAATAATCCACATTGAATTGTTTTCTTCCACCTGATGCAGAGACACTTTCACTGAAACTTGAAGGTAATTTCTTGTATTTAATCAAAACGTTGAAAAACGTTTTTAAGAACTCTGTGGAGTAACAACGGTGATTCTTGTATGTTTGAACTCTTATGCCATCAGGTCCCGTGTGTCCAGAATCAGTTAAAGACTTGATCACATTCAGTATTTCTGCACCATTAATTTTTCCCGCTCTTTTGTCCGGTTCATACCGCTGTAATTGTGAAGCAACATTTGGTACCTCCATCACTGTGAGATACATCAGTAGAAGCAAATGATCTGAATCAGATTTTCGGATTTTGACATCTTTTATTTGTTCCAAATTGTCTTCACACAGAAGAAACATGTCTAATCTAGAAGAACTGCCATGCTGTTTCTCAGAATATGTGAACTTCCTTGACTCTTGGGTAAAAGTATGCCCAAGTATCCATTAGATTTAGAGAGGTAGTGAAATTTCTAAATGGGTCCCACAGCTGTGTATgcgatactttttttttctcagatgttCGATCACAGCTAAGATCGAGAACTGTGTTGAAATCTCCTCCAACCACGAGCACACCTCTGGCTGCCTCCCTCAGGTATCCCTGCAGTCTGTTTAGCATTTCTTTGTCATCTTTATGATTGTACACATTAACTAGAGTGAACAGCGCACCGTGAAGATAGCAGAAGAGTACGAGATACCCCCCACTATAATCCTCATCGTGCATAAGTACTCAAAAGGTACACCATCTTTTATCAGGATGGCCACTCCTCTGCTAGTAGAGTCACAGATCGTAAGAAACGATCGCCAGCCGTCAGGCTTTTCTAAAGGAGTTTCACTTTCAGGTCCAATGTTGGTCtcttgcaaaaagaaaatgtctgcCTTTTGCTCTTTTGAGAAACGGTCAACGCTTGGGTTTTTTTGTCTACAAATATTCCACGAGACAAAGCAAAGAGTTTGCTCTTTAGATGAAGCCATTATTTCAGTGAATCCTCTGTTGAGCaagtaaacataaatataaattcatgcCTGGTCTGTATGCATTGTTAGAAGACAAACTTAATCAAGGGAAAAAAGagattttacattgtaattaaatgctaaattaacacattaaatttAGAGCCAATTGAAAGGAATAAGTACATTTACTAATAATGAATTTCACTGAAAATAGTTTAATCTTACCTTTCCCACTGTACTAATCTCTCACAGCCTGCACCGTGTACTGTGTTGTCCGTACAGTATGTTTGCACATGTGACTTACTGACAATGATGTGTGGATGTAGAATACAATTGGGTAGGGCATCATACTTTAGTGTCTTTCCTTTCATTTAGGTCTGTTCACAAAGCTTTAtttcaaacacaacacacataaTTCATTGTTCTAGCAGACCAGTTTCACTCCAATTCATGTCTGAACATCCTACATGCATGCTGTGTGTATAGTATAGACTACTACATTTTCTAATCAATAACAAGTTCATTTCTCCTGACCATTTGTTTTTGGAGTTAAACAGATGTCTTTAAACAGAACATTAGATGTAATGACAGTGGCTTGTAAAAATACCATGTTCTTTCTTCCCTCCTTCGcctatttaaattaaaacaatatcaaTAAACATTAGAAATAGCAGGTCCGTATTTGatgttctttattttgtgcatgCTCTTCAGTGAACTGTGCTCTGTAAGTCGTTAGGAtgacaaaaagtttaaaaggtCGTTTTTAAGGTCTGCCTAATTGGTCTTGCTGGTGTAGAAATGACCCACTGGGGATCCAGATACCCATATAATGGTACAAAAGCTCTCCCTTCGGCAGTTCCTATTCAAAAGCAATCATTTTGATCTCACTTCAGTGAATAAACCGCCATGCTAAACCATGAGTTTTATCACCGAGGTgccatgtacatttttttacagcCCTACTGTCAGAGTAGGGCTATTCCCTCGCTTATAATTTACTTTGCTACTTAATCTACCGGTGTTCTCTGTTATTCATTGTTGTCTGCTCGGCAGACCCTGTGTGCTTCCCTTCAgggttttgttttacttttgattGTTAATAAAGAACTTGAGATGTCAAGTGTGTGACCAGTTGATTTCAATCTATTCTGTGCTACATCCAGCACCActatcattttaaagttttactgTAGGCCTGTAACTTAAAGAAATTCTAGTGTTACTGTCTGACCTGCTGCACAACATACCTAACACTGATCCACCCTCTTAAAACACTTACCAGGAACTGATCTCACCGCTTTCTGACGCTTTTTACAACATCTCTATACAATCAGATAGGAATCGAAGATCAGTGGAGAATAAAGATGTTTATTTCAGAACAGAAAGGCGatgtttccatttaaaattttgttgttttgcattttaaagtaatgtTCAGATTGCTGAAGCTCATGCAAACGGTGAAAATGGATTCACTCTCTGTTGAAGAGCCTTCTTGCAGTTTGCACAGAAAGACACTCAAGCTCTTCTGTCTGGAGGACAAACAGCCGGTGTGTTTAGTGTGTAGAGATTCAGAGACACACAACGAACACACATTCAGACCCATCGGGGAAGTCGTTTTATCATACAAGGAGGAGCTTAAAACAGTGTTGAAGTCCTTACGAATTAAAATTACACAAGGAGTAAAAATGAGAGAAGAGTTTGAGAAAACGGTTCAACACGTCAAGTCTCAAGCTGATCACACAGAGCATCAGATTAAACGGCAGTTTGAGGAGCTTCATCGGTTTCTCAGATATGAAGAAGAAGCTACAATCACTGCActgagggaggaagaggagcagaagaagaagatgatgaaggaGAAGCTGGAGGAGATCAACAGACACATCTCAGCTCTTTCACACACAATTAAAGACATGGAGGAGATGATGAAAGACAATGATGTCTGCTTTCTGAAGaagTTTCCGGTCTCGATGCAAAGAGTCCAGATCTCATCACAGCCGGATCCACAGACACCTTCTGGAGCTTTGATTCATGTGCCACGATACTTGGGCAACCTGTCCTTCAGAGTCTGGAAGAAGATGCAGGACATCGTCCAGAACACTCCTGTGATTCTGGACCCAAACACGGCAAATCCAGATCTCATCCTGTCTGAAGATCTGACCAGCGTGAGATACAGTGACAACAAACAACTTCTTCCTGATAATCCAGAGAGATTTGACTATTATTCCTGTGTTCTGGGTTCAGAGGGTTTTAATTCAGGAACATTTTGCTGGGACGTAGAGGTTAAAGGGAGTTCATCCTGGAGTCTTGGAGTCACTACAGCATCAAACCAGAGAAAGGGACGGGATTTCTTTAGCACTGATGTTTGGAGTGTGTGCCATGGATTATGTGAACCATCTGGTTTTCTTATTGACCAGGATCTTGatcgtgtgagagtgtgtctggaCTATGACGGAGGAACAGTGTCATTCTCTGATCCTGTAACtaacacacatctacacacattcacaaccTCCTTCACCGACACTGTCTTTCCATTCTTTTGTAGTATTTACCACCTGAGGATCTTACCGTATAGTTACAGTACTGTAATAGTCCGTAAACGTTACACCTGTAGCTCTAAATCAGTGAGAGTGcagtgaaataaaaactgcagAGCTTAATAACCATGCCCTGTACAGCTTTATTTAGTTAATCTCATCTGGTTATAGCATCTGATCAGGCTGCGTTATGCATCGCCTGATTAAGTGTCAATCAAATGATCATAAAACCTTGATTTAAACGTGGAATATATGAAAAAGGTTCTGATTTAgatcaataaatattaacatataata

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24529 lncRNA downstream 31784 2645891 ~ 2646750 (-) False G16475
TU24530 lncRNA downstream 31784 2645891 ~ 2646750 (-) True G16475
TU24520 lncRNA downstream 72240 2606060 ~ 2606294 (-) True G16467
TU24517 lncRNA downstream 88472 2589789 ~ 2590062 (-) True G16464
TU24497 lncRNA downstream 90674 2584894 ~ 2587860 (-) True G16453
TU24943 lncRNA upstream 585869 3270076 ~ 3271309 (-) True G16753
TU24980 lncRNA upstream 791118 3475325 ~ 3525238 (-) True G16780
TU24978 lncRNA upstream 818801 3503008 ~ 3526848 (-) True G16779
TU24981 lncRNA upstream 833606 3517813 ~ 3523248 (-) True G16781
TU25026 lncRNA upstream 937282 3621489 ~ 3621869 (-) True G16815
XM_043235041.1 mRNA downstream 3747 2671657 ~ 2674787 (-) True LOC122341581
XM_043235065.1 mRNA downstream 10167 2665352 ~ 2668367 (-) True LOC122341599
XM_043235027.1 mRNA downstream 38443 2631782 ~ 2640091 (-) True nup85
XM_043235028.1 mRNA downstream 38444 2631782 ~ 2640090 (-) False nup85
XM_043235056.1 mRNA downstream 73123 2596687 ~ 2605411 (-) True cygb1
XM_043235038.1 mRNA upstream 16159 2700366 ~ 2705732 (-) True LOC122341577
XM_043235040.1 mRNA upstream 21550 2705757 ~ 2709504 (-) True LOC122341579
XM_043235046.1 mRNA upstream 28751 2712958 ~ 3378013 (-) False rbfox3b
XM_043235047.1 mRNA upstream 32150 2716357 ~ 3378014 (-) False rbfox3b
XM_043235045.1 mRNA upstream 32150 2716357 ~ 3378007 (-) True rbfox3b
TU24533 other downstream 24504 2649842 ~ 2654030 (-) True G16478
XR_006250470.1 other downstream 38443 2631782 ~ 2640091 (-) False nup85
XR_006250471.1 other downstream 194310 2479128 ~ 2484224 (-) True LOC122341591
TU24448 other downstream 228331 2444068 ~ 2450203 (-) True G16421
TU24428 other downstream 254988 2333556 ~ 2423546 (-) False LOC122341602
TU24952 other upstream 631231 3315438 ~ 3319064 (-) False LOC122333478
XR_006250494.1 other upstream 789237 3473444 ~ 3483449 (-) False LOC122341810
XR_006250503.1 other upstream 1167145 3851352 ~ 3863851 (-) False LOC122341931
TU25103 other upstream 1300460 3984667 ~ 3985667 (-) False LOC122340684
TU25102 other upstream 1302033 3986240 ~ 3987431 (-) False LOC122340684

Expression Profile