RNA id: XM_043235065.1


Basic Information

Item Value
RNA id XM_043235065.1
length 2085
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC122341599
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2665352 ~ 2668367 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGAACAGGAAGAGACTGACTTATTTCTCTTTTTCGTCATACTGACTGCTCTTTATGTCtgtgaaagattaaaaaagaaacgtGAAGAAGGAAGATAAACCCTCTGAAGAATTATTCAGTCGTTTGTTTCTGAATAGACAGCTGATTTTTGTAAGTGATAGGTGGAGCTCAAATGGCTTCCCTATCGGAAGATGTTTTGTGTCCCGTGTGCCGTGAAATCTTCAAGGATCCTGTTGTTTTATCGTGCAGTCACAGTTTCTGCAAAGAGTGTCTTCAACGGTTCTGGAGAACCAAGGAAACTCAGGAGTGTCCCGTCTGCAGGAGAAGATCCTCGAAAGAGGAAATTCCTCCTAATCTGGTGTTAAAAAACTTGTGCGAGTCGCTCCTGAAGGAGAGAAACGAGAGGTATTCATCTGGATCTGAGGAGATCTGTGGTGTACACCGAGAGAAACTCAAGCTCTTCTGTCTGGAGGACAAACAGCCGGTGTGTTTAGTGTGTAGAGATTCACAGAAACACGTCAGTCACACATTCAGACCCATCGGGGAAGCCGTTTCATCGTATAAGGAGGAGCTCAGTACCACACTTAAGTCCTTTCAAGAGAAATGTAAACatagtgaaaaaaagaaagatgagtTTGAGGAAACAATTCAATACATCAAGTCTCAAGCTGATCACACAGAGAGTCAGATTAAACAGCAGTTTGAGAAGCTTCATCGGTTTCTCAGAGATGAAGAAGAAGCTACGATCACTGCActgagggaggaagaggagcagaagaagaagatgatgaaggaGAAGCTGGAGGAGATCAACAGACACATCTCAGCTCTTTCACACACAATTAAAGACACAGAGGAGATGATGAAAGACAATGATGTCTGCTTTCTGAAGaagTTTCCGTTCTCGATGGAAAGAGTCCAGATCTCATCACAGCCGGATCCACAGACACCTTCTGGAGCTTTGATTCATGTTCCACGATACTTGGGCAACCTGTCCTTCAGAGTCTGGAAGAAGATGCAGGACATTCCTCCTGTGGTTCTGGATCCAAACACGGCTCATCCACGTCTCGTCCTGTCTGAAGATCTTACCAGCGTGAGATACAGCAGTGACAAACTGCTCCCCGATAATCCAGAGAGATTTGACAAGTCATACTGTGTCGTGGGTTCAGAGGGTTTTAACTCAGGGACACACAGCTGGGACGTGGAGGTTAAAGACAGTCGTTCCTGGAGTCTTGGAGTAACTACAGCATCAATCCAGAGGAAGGGTTTCATTTCTCTTACTGATGGTGTCTGGACTGTGCAGTTCGGACTAAATAAATGGGCTGGCTTTGGTGTTGACCAGGATCTTGatcgtgtgagagtgtgtctggaCTATGACGGAGGAACAGTGTCTTTCTTTGATCCTGTAACtaacacacatctacacacattcacaaccaCCTTCACCGACACTGTCTTACCTTTCTTCTGGTGTTATGGATTTTCCTCTCTAAAGATCTTACCGTTCAACAGTCAGTAATCATTTCACCTGTAGGTCTGGATCTTCCTGTTTTCATCATGGGTAACAGTGCTGTTGAACTGTGTATCAGTGCAGCTGTGATCTGATCACATGACTGATATCTAGCACTACAGACGCACTTTCATATTTCTTTAAGTGATTAATGTATCTTAAAGATTTCACAATCTTAAagaccagatttttttttcccccaaacaaAGCCAAAGCAGGACTGAGTAGTGCAAATTAAGTGAACATATCATACATCGCAGGTACCAATAGTTGCCTTTTAATTGTtccaaaaataatgaatacttGTAAAATACTTGTAGAAttctgtacagaaaaaaaaaaatattacaaagctGATAGCCTAACGTCAGTGTAATTCATTAACTTGTGCAAATGTAGTGCAGCCTAAATGTTTTAGTCACACAGTCCCAGTCCTCAGtgaagcatttttcttttaaaatatttttaaacaattatattgtTCACTTAATCCTGTAAAATAATAGCATAATATGCACATGTTGCTGCACTGTAACATCACTTGttaaaaacctaataaaaagcACTACAGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24529 lncRNA downstream 18602 2645891 ~ 2646750 (-) False G16475
TU24530 lncRNA downstream 18602 2645891 ~ 2646750 (-) True G16475
TU24520 lncRNA downstream 59058 2606060 ~ 2606294 (-) True G16467
TU24517 lncRNA downstream 75290 2589789 ~ 2590062 (-) True G16464
TU24497 lncRNA downstream 77492 2584894 ~ 2587860 (-) True G16453
TU24943 lncRNA upstream 601709 3270076 ~ 3271309 (-) True G16753
TU24980 lncRNA upstream 806958 3475325 ~ 3525238 (-) True G16780
TU24978 lncRNA upstream 834641 3503008 ~ 3526848 (-) True G16779
TU24981 lncRNA upstream 849446 3517813 ~ 3523248 (-) True G16781
TU25026 lncRNA upstream 953122 3621489 ~ 3621869 (-) True G16815
XM_043235027.1 mRNA downstream 25261 2631782 ~ 2640091 (-) True nup85
XM_043235028.1 mRNA downstream 25262 2631782 ~ 2640090 (-) False nup85
XM_043235056.1 mRNA downstream 59941 2596687 ~ 2605411 (-) True cygb1
XM_043235019.1 mRNA downstream 87013 2565436 ~ 2578339 (-) True LOC122341565
XM_043235033.1 mRNA downstream 103205 2542845 ~ 2562147 (-) False LOC122341573
XM_043235041.1 mRNA upstream 3290 2671657 ~ 2674787 (-) True LOC122341581
XM_043235042.1 mRNA upstream 10167 2678534 ~ 2687338 (-) False LOC122341582
XM_043235043.1 mRNA upstream 10167 2678534 ~ 2684207 (-) True LOC122341582
XM_043235038.1 mRNA upstream 31999 2700366 ~ 2705732 (-) True LOC122341577
XM_043235040.1 mRNA upstream 37390 2705757 ~ 2709504 (-) True LOC122341579
TU24533 other downstream 11322 2649842 ~ 2654030 (-) True G16478
XR_006250470.1 other downstream 25261 2631782 ~ 2640091 (-) False nup85
XR_006250471.1 other downstream 181128 2479128 ~ 2484224 (-) True LOC122341591
TU24448 other downstream 215149 2444068 ~ 2450203 (-) True G16421
TU24428 other downstream 241806 2333556 ~ 2423546 (-) False LOC122341602
TU24952 other upstream 647071 3315438 ~ 3319064 (-) False LOC122333478
XR_006250494.1 other upstream 805077 3473444 ~ 3483449 (-) False LOC122341810
XR_006250503.1 other upstream 1182985 3851352 ~ 3863851 (-) False LOC122341931
TU25103 other upstream 1316300 3984667 ~ 3985667 (-) False LOC122340684
TU25102 other upstream 1317873 3986240 ~ 3987431 (-) False LOC122340684

Expression Profile