RNA id: XM_043235045.1


Basic Information

Item Value
RNA id XM_043235045.1
length 4831
RNA type mRNA
GC content 0.43
exon number 14
gene id rbfox3b
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2712958 ~ 3378014 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCTCTGATTCTCCCACACACGCTCTCTCATTCCCGCGCTGTCCTTGTTTCCAGACTGCCGCGTGTTTCCAGCAGCTCTTcatcagaggaagaggaggagggagaTACCCTGCGGACGGAGATTacacacccctcacacacactgatcAGGAACGCTGCGAGTGCGTGAAGCACGGAGCCCTTCTTCTCGGAGCCGCCCGGTTCATGGATATTCCCCTCTGGACAGAGTAaacagagagagcgagggaaGCCGCGCCGACAGCAGgacgagagacagacagagatagagacagagacagtgtgCGTTTAAATGTGGAAAGCGTCCTCTCTGAGCTCCATGGCAAACTCTGCGTGCGTGCTGCTGTCCGGCTCCGGGATGCTGCCACACTCGCTGCACGCGCCGCACGCCTTCCTCTACTTGTCCGAGgGTAATCAGGAGGCCAGCAACCCGGCGGACGCGATGGCCCAGACTTACACCCCGCAGTTCGCTCATCCCCCGCAGAACGGCATCCCGGCCGAGTTCACCGCGCTTCCCACGCAGGACTACGCGGGACAGAGCCGCGTCCCGGACCACGGCCTGGCGCTCTACACGCCGGCGCAGAGCCACAGCGATCTGACCAACACCGACAGCAGCACGCCGGCCATCAGCAGCAGCGGCAGCACGGCTCCGACGGAAGACGTGACGCAAACAGAAGTCTCCCAGCAGGTGCCGCATTCGGAGTCCACGGAAAAACAGCAGCCCAAGCGGTTACACGTCTCCAACATCCCCTTCCGCTTCCGTGACCCGGATTTACGGCAAATGTTCGGGCAATTTGGGAAGATCTTAGACGTGGAGATTATCTTTAATGAAAGAGGATCAAAGGGCTTTGGCTTTGTAACTTTTGAAACGAGCGCAGACGCAGATCGTGCGCGGGAGAAACTAAACGGTACAATCGTAGAAGGACGTAAAATCGAGgtgaaCAACGCCACGGCGAGAGTGATGACGAATAAGAAAGTAGTAAACCCGTACACAAACAGCTGGAAACTCAATCCGGTGGTAGGAGCCGTTCACGGACCGGAGCTCTATGCAGtgacgGGTTTCCCGTATCCCGCAGCAGGAGCGGCGGTGGCGTACCGAGGCGCTCATCTTCGAGGCAGAGGCCGGGCCGTTTACAACACCTTCCGCAcggctcctcctcctccgcccATCCCGGCCTACGGCGCGGTGGTGTATCAGGACGGGTTCTACGGCGCGGAGATCTACGGTGGATACGCGGCGTACAGATATACCCAGCCTGCGACGGCGACAGCGTACAGTGACAGTTATGGGAGAGTCTATGCAACTACCGACCCGTATCACCACACCATCGGCCCGGCAGCCACCTACAGCGTGGGGACCATGGCGAGCCTGTACAGAGGAGGCTACAGCCGCTTCACGCCCTACTAGAGAGACTAAACCACTGATTACTCAAACTAGCACACAAAACCACTAGACTCGTTCTGCTACACGGAGTGCGCTTTCAAACTAAAATGCTTCCAGGTCACCCAACGGCCCCTCATCTCTCAAGCGGACGTTGTGGAAAATCAGTGGGAAAATCAGAAGAGCAGCTCACAAacgtggattttttttttccaccctttgatttcagacatgtttttttttgtacaccaACGGTTTTCCCGCATTCGCGTTTTGCCTGCAAAAGCGAGGACGGCGCgtcaaaaagcatttcaaagcGGCAAGAACGTGAACTGTTGTGCGGTCCTTTAAATGATcgttttgttatgtatataagCTGCTAGTGTGAATTCAGACAAGAGACGGAAAATATCTCAGGACTCTCTTCAACTTTTCTCTGAATCCAAAACCACCCCCAGCAGACACGAAAATACGCTCCACCAGATATCGCCAGCATACTCTAGTCTCTGTGGTCTGAAACGGTGTGTTTAATAAGCTGTCCTCGTTTAGTTGCCGGGGTCTTATTTGAAGGGTTTCTATGCATGTTGTTTCAGAGATGAGAGGACTTTTGCACTAACAGATTTACCTCTGTACGCAGTGGACAGGTTTAACTCGCGCCCAGTGGATGAGCGAGTGctttcacaataacacatacggGATTAAACCCTCATTTCATGTACGGGAACATCGCATAAAGTTAACAAAGAGGCTTTGAGAGCGATGTGGATTTTCGAAGGAAGGCCGTATTATTAAATTCATGAAAACACATAATGGGATTTAAAGGGATGTGAGAattttttgaattgtaataaatatatatatatatagacatggTGAGATTGAGGGAGTTATgcatagaaatgtaaaaaataataaagatttacagagaaattaaaaaaatatataaactcttacgcttaaatacatgtaaggCAAGGCACTATGAGATaaacaacactgtaaaaaaaaaaagttggttcAACTTGAACATATTTTGCTTGAAATTTCtttgtttagtcaactaaaatattttagttgtcgCTTTAACTCAAAAAGTTTAAGTTGGCTCAACTAAAAAAGTTTAGGCGACGGCGTATCAAGGtatttcaaggttttttttttttttacagtgaattttcagttttgagaTTTTGGGCAATTTTGTTTCCAGACTAgtgaaaagaaaacatccagAATGCACACGagtgtttctttattttctaaacGTTACCTACATACACCAGACTCAGCATTTCGATTCCTCTCTATATTCTGAAGGCTTTTCTAGAAAGGTTCGTTCATACATCGTTTCATTATTGCACTAGAACTATTTATATCTGTAGATTGCGGTTgcaatacatacatttaaaggctgttttctctACGTGAGTTGCTTTTTCCACTTCTAAAATATATCGACGGCTTTATACCCatctatattctgaaggtttttataAAGCTGTTCATTCACACAATATTCTCTTTGTTTCATTATTGCACCATAACTATTCATGTCTGTAGATTtcaattacagtaaatatatatatatttaaaggttGAGTTCGTTTCTCCACTTCAGTATACTGAAAATTACCAAATTTTATTCCTATCTATATTCCGAAGATTTTTAATGAGGgatttgtttgtatattattcacaataatttatattcatatattcatgtctaaaaacatgttaaaagtgtattttcacTTACATACACCAAAACCGTTTTCATTTATCTGTATTCTGAAAAGCGTTTATTGATTTTATGATCGCACTTTATCTCTTTGCATCTGTAGATTTCAGAATGAGTTTCTCCGATTTAGCAGCATTTATGAATTTTAAGAGTTCGATTAGTATCtatattctgaatatttttatagagGGGTTCGTTCGTACATGATTTGCACTGctatgtattacattttattcctaaaacgtaaagaaaatgtcttttttttctgcccgttaggggttttttttatttatagaggataaaaaaaaatctcttctgTAAAACGTGTAACTAACATGTAACAAACTAAACctaaaaaagatttattcaatGCCATTTTTGCAAGTGCGCACGTATTTCATTAGAAAATGCCTCATTCGcgtgtttaaaagaaatatctgAAAACTTACAACGGCGTTTTCTTCGTGTATTGTACGTGTAGGTGATATATATGTTCGCCTGTAGTGtcttgccttaaaaaaaaacgtactgaGACACGGTGAAGCATAAAGAACCGTAAGAAAAGAAAcctaaagagaaaagaaaggagaaaagcCGTCGGCTGAGAGTTTCTTGTTTCCTTTTCCGCTTCCATCTGAATGcattaatgattaaatgtgAACAAGTTCAGTCTACACCTCACTgattcaaatgcaaaacatgGACAGGGACCCTAAGTAGTGTGacatttgttaataattaaGATGGAAACTCTCAAGAGCCCGTGTTATGATGCTTCGGACTCAATTCAGCCCCCACGCGCTGTAAAAATGTCACTTGATTCACGTAATTAGGGCTATATCCTTGAGGAAACTTAACTTTTGAGGGACGTGACTGAGTGAAGGGCCTTTATGCTTGAAGTAAGGGTAGGAAAAGTTAACCATGTTTACACACTAACGTATCAGCAGCTGATTTCCCGAATCTGCTGCAGATCTCTGTCGCGTCCGTGACTTTGTTTTAGGGACTCTTGAGGGTTTTTGCACTGAACCGCAGTAAACGTAAGTCCGtgttttcctctcttttatTCCCCTTCGACCGGTTAAGGCCGCCGCCGAGCCTCTGTGGACGTGAAAGACGCCATTTTTTTTCCGTTTCGCTTCCACTCAAAAGTTAACGTACGAAGAACCAGCAGGCGGACAAAAGTACACGCGTGACATGCAtcgttttaaaatgtcataatgaAGAACCGCATAATTATTCTGCAGCTCATAAAGTCGACATATCAGCATACGTTACGATTATTAATCACGTCTATGAAGTCTTCAGGTCTCGACTCGTAAAGGCCAGCATGTTTACCTGCtgtttaagcaaaaaaaaaaaaaaaaaaaaaaaaaacacacgtagagttgggaaaaaaaatacaaaaagcaaaaaattttgtaaatacgtgtatatatatacttcgGAAATATCGTATGATTCTCTTCCTAAGCGTTTCAGTACTTATAACGGGTTTTATGTGTTATCCTTTAAACGctatgtcatttattttcacttgtttttgtCTGAGGGTTTTGTCAGAAGTGCTTTTGTTGGATATACTCAGCACTGTATACGATGTGGTCTTTTtgcatatgaaaatatttgatgtttatatatacaagTTCATTATAACTCATGAATATGTCTACGTAAAAAATAAAGAGCTTACATGA

Function

GO: NA

KEGG:

id description
K14946 RBFOX, FOX; RNA binding protein fox-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24529 lncRNA downstream 69607 2645891 ~ 2646750 (-) False G16475
TU24530 lncRNA downstream 69607 2645891 ~ 2646750 (-) True G16475
TU24520 lncRNA downstream 110063 2606060 ~ 2606294 (-) True G16467
TU24517 lncRNA downstream 126295 2589789 ~ 2590062 (-) True G16464
TU24497 lncRNA downstream 128497 2584894 ~ 2587860 (-) True G16453
TU24980 lncRNA upstream 97318 3475325 ~ 3525238 (-) True G16780
TU24978 lncRNA upstream 125001 3503008 ~ 3526848 (-) True G16779
TU24981 lncRNA upstream 139806 3517813 ~ 3523248 (-) True G16781
TU25026 lncRNA upstream 243482 3621489 ~ 3621869 (-) True G16815
XR_006250532.1 lncRNA upstream 405730 3783737 ~ 3786865 (-) True LOC122342142
XM_043235040.1 mRNA downstream 6853 2705757 ~ 2709504 (-) True LOC122341579
XM_043235038.1 mRNA downstream 10625 2700366 ~ 2705732 (-) True LOC122341577
XM_043235042.1 mRNA downstream 29019 2678534 ~ 2687338 (-) False LOC122341582
XM_043235043.1 mRNA downstream 32150 2678534 ~ 2684207 (-) True LOC122341582
XM_043235041.1 mRNA downstream 41570 2671657 ~ 2674787 (-) True LOC122341581
XM_043235533.1 mRNA upstream 58679 3436686 ~ 3451093 (-) True nog1
XM_043235448.1 mRNA upstream 95437 3473444 ~ 3483449 (-) True LOC122341810
XM_043235449.1 mRNA upstream 95437 3473444 ~ 3483445 (-) False LOC122341810
XM_043235450.1 mRNA upstream 95437 3473444 ~ 3483440 (-) False LOC122341810
XM_043235451.1 mRNA upstream 95437 3473444 ~ 3483315 (-) False LOC122341810
TU24533 other downstream 62327 2649842 ~ 2654030 (-) True G16478
XR_006250470.1 other downstream 76266 2631782 ~ 2640091 (-) False nup85
XR_006250471.1 other downstream 232133 2479128 ~ 2484224 (-) True LOC122341591
TU24448 other downstream 266154 2444068 ~ 2450203 (-) True G16421
TU24428 other downstream 292811 2333556 ~ 2423546 (-) False LOC122341602
XR_006250494.1 other upstream 95437 3473444 ~ 3483449 (-) False LOC122341810
XR_006250503.1 other upstream 473345 3851352 ~ 3863851 (-) False LOC122341931
TU25103 other upstream 606660 3984667 ~ 3985667 (-) False LOC122340684
TU25102 other upstream 608233 3986240 ~ 3987431 (-) False LOC122340684
TU25236 other upstream 1025090 4403097 ~ 4407697 (-) True G16953

Expression Profile