RNA id: XM_043235450.1


Basic Information

Item Value
RNA id XM_043235450.1
length 2332
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC122341810
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3473444 ~ 3483449 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGTCAGCAGCGGTCACATGACTCTGGCGGAAGCGGCAGCATGGCTCTGCTCTTCAGCGACGACGAGATCCAGCGGGCCTGGACCGAGCTGGACGAGCCGCAGCTCGACGGAGGATGGGAGCTCTTCACCGAGACCATGAACGTCAAAATATACCGACTCTACAACAAGGAGACGGGTCTGTACGAGTACAAAGTGTTCGGTTCTCTGGCCGGCTGCGCTCCGGATCTCTGTGCAGACGTTTACATGGATCTGAACTACAGGAGACAGTGGGACTCGTACGTCAAAGCTCCTCCTGTTGCCGGTGGTCAGATTCGGTCAGATGCGCAGAGCTCCACGAGAAGGACTACGGCGAACAGAAAGCCATATACTGGGAAGTTAAATATCCATTACCTCTGTCCAACAGGGATTACGTGTACGTGCGGGAGCGCCGGGATCTGGACGTGGGAGGACGGAAGATCTGTGTGGTTTTAGCCAAGAGCTCATCTGTGTCTCAGTGTCCAGAGAAGAAGGGCGTGATCCGGGTCAGAGACTACAAACAGAGTCTGGCCATGGAGAGCGACGGCTCCGGCGGAACCAAagTGTTTATGAACTACTTTGACAATCCTGGAGGAATGATCCCGGCGTGGCTGGTGAACTGGGCAGCGAAGACGGGCGTCCCTGGCTTCCTCACCGACATGACGAAGGCCTGCGGGAACTACAGCAGCTACTGCAGCAACAGCAAGTGATCCTGTCCGGAGGGCATTCTGGGAAGAGTCGGAGAAAACGGCACCAGCCTACCGTTGAACGCCAGCAGGAAGTTAATCTAATTTGAGTTTGGAAAATGTGTTGGACGTAACACGGATTCATCACGGCACTTCCATTGGTTGTTATTTGTGAATGTACGTATATCAAATGCACAAAATCAATCGGCTAGGGTGCATTTATTCggtcaaaaatacagtgcaaacggtttttaaaaaatgtcatttattcctgtgacgcaatgctggattttcagcattattgcttcagttttcagtgtcgcacgatccttcagaaatcattttaatacactgatttgctgctcactGATAATAGTATTGTTATCAATAATTGTTCTTATCGATCTGTTTTTGCTGcctaatgtttttgtgcatgcattttCCCAAgctctttttaattaatgcaaagtTCAAATGCACGAAATGCAAGTCTTTcctaacattaaaaatgtgtctttcGCCTCGCTTTTGACCGACTTAGTGCTCCTTCGCTTTAACGAGAAACCTTTAATTAGTTTCCGCACAGATGTGCTGATAATAATTAATAGATTAATAGATTTCCGAAAGAATCACGTGACGCTggagagtaatgatgctgaaaattcagctttgatcaaagCAATAAATTGCATGAACACGTTTTCGCGCAAAACgcacttattttaaatggcGATGatatttgaccattttttttctactgtaggtataaaaaaactactttagGTTCTGATCTGAACAGTTATACAATGCTGCTGTTATAGATCACAATCATGCACTTAATGTGTGTTTTACGGGACATTTTAGCATGTGCTGGTGTTGAAGGAGTCCTTTCCCATGAGCCTCTGCGGTTGGACTGGAGCGATCCATCGTTCTCTGCTGGTGGATATTTAACCAAGACGGTTCgcactgatttttattttaacgcCGGATGCTGTTTTTTAAGAGTTAATGCAACCTGCTGTACGTTGggaaatgtaattatatttctgaTATTTTGCAAAGGGATCACGCACGAATCGCATTTATGACACGTGCCCGAAAACCGAGGTGGGACTGTTGTATATTGACGAACATTTGCATGGAAAATGCCTGCACTCACGTCTGAAATCATACCTGTGAGCCGTTTACATGGTAACGCCGAGCACACAAACAAATTGGCTGTTAGAATATCGTTTTGAGATGCAAAATCTGTATTGTAATTGAGATTAAGTGGCAGATCCGTTCATCTTTCTGTGATACTGCATGAATGTTACGGTGGACGAATattgtgtgattttaaaaagaagcgCTTTGATGCAATCCAGGCCGTTCGTATCCGCTGGggtttgtttttagaaatcGATAGGAAATGAAGCCTCTGACTCCATTTTAACACGCCGTAGTTTCGTTGTATCTTTTGGTGCACTGTCTTCCCCtggttttcagattttttacttattattttgaCATCTCTACCTCTTAAACTCGCtgtgctgaaaatgaaaaaataaaaatcaaatctgtACATTCTTCCTAAAGCACtttattattgcaaatatttgatTGCAATAAACTGGTGTTCTGCCTTTAA

Function

GO:

id name namespace
GO:0008289 lipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24943 lncRNA downstream 202135 3270076 ~ 3271309 (-) True G16753
TU24529 lncRNA downstream 826694 2645891 ~ 2646750 (-) False G16475
TU24530 lncRNA downstream 826694 2645891 ~ 2646750 (-) True G16475
TU24520 lncRNA downstream 867150 2606060 ~ 2606294 (-) True G16467
TU24517 lncRNA downstream 883382 2589789 ~ 2590062 (-) True G16464
TU24978 lncRNA upstream 19568 3503008 ~ 3526848 (-) True G16779
TU24981 lncRNA upstream 34373 3517813 ~ 3523248 (-) True G16781
TU25026 lncRNA upstream 138049 3621489 ~ 3621869 (-) True G16815
XR_006250532.1 lncRNA upstream 300297 3783737 ~ 3786865 (-) True LOC122342142
TU25171 lncRNA upstream 653678 4137118 ~ 4138203 (-) True G16901
XM_043235533.1 mRNA downstream 22351 3436686 ~ 3451093 (-) True nog1
XM_043235047.1 mRNA downstream 95430 2716357 ~ 3378014 (-) False rbfox3b
XM_043235046.1 mRNA downstream 95431 2712958 ~ 3378013 (-) False rbfox3b
XM_043233694.1 mRNA upstream 44297 3527737 ~ 3543412 (-) True hlfa
XM_043233695.1 mRNA upstream 44297 3527737 ~ 3543411 (-) False hlfa
XM_043234886.1 mRNA upstream 103201 3586641 ~ 3607128 (-) True foxk2b
XM_043231175.1 mRNA upstream 130512 3613952 ~ 3616491 (-) True LOC122333516
XM_043235749.1 mRNA upstream 134903 3618343 ~ 3620127 (-) True LOC122341986
TU24952 other downstream 154380 3315438 ~ 3319064 (-) False LOC122333478
TU24533 other downstream 819414 2649842 ~ 2654030 (-) True G16478
XR_006250470.1 other downstream 833353 2631782 ~ 2640091 (-) False nup85
XR_006250471.1 other downstream 989220 2479128 ~ 2484224 (-) True LOC122341591
TU24448 other downstream 1023241 2444068 ~ 2450203 (-) True G16421
XR_006250503.1 other upstream 367912 3851352 ~ 3863851 (-) False LOC122341931
TU25103 other upstream 501227 3984667 ~ 3985667 (-) False LOC122340684
TU25102 other upstream 502800 3986240 ~ 3987431 (-) False LOC122340684
TU25236 other upstream 919657 4403097 ~ 4407697 (-) True G16953
TU25544 other upstream 963940 4447380 ~ 4448881 (-) True G17131

Expression Profile