RNA id: XM_043233694.1


Basic Information

Item Value
RNA id XM_043233694.1
length 4760
RNA type mRNA
GC content 0.45
exon number 4
gene id hlfa
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3527737 ~ 3543412 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTTGCGCTTTTGCGCTCAAGTCAGCCGAGCTCACGGACGCGCGAGAACAGCCGCCGCTCTTCGGTGCCGTGCACGGGCTGAGGACTGCATCCCGACAACCCCCTTCCCCCGCgcagagcttttatttttatataagttggcttttttaaaaacaatatttggttTCTTCGGGAAGGCTGATCTCTCCTTTACGCGATGGAGAAGATGTCTCGACCTCTTTCTATAAACCCAACTTTCCTACCTCCGACCCACGGCGTCCTGAAATCCCTGCTGGAGAACCCCATGAAGCTGCCCTTCCACCACGATGAAGGTAAAGGCTtcgggaaagagaaagagaaggagaagaagctGGAAGAGGACGGAAATGCCCTCAACACTCCTCAGTCCGCCTTCTTGGGCCCCACGCTGTGGGACAAGACCCTGCCGTACGACGGCGACAACTTCCAGCTGGAGTATATGGATTTAGAGGAGTTCCTGTTGGAGAACAATATTCCGGCCAACCCTGGGAGCGAGCAGAGCCAGccttcccagcagcccctgcagcagcagcagcagcagccgccGCCCTCGGCCCCGCCCTCGGCCACGCCCACGCCTTCGGTGGTGGACCTCAGTAACCGGACGGCCCCGTCCGTTCACTCCGGCATCGTGGGCCAGAACTGCCTCCAGAGTCCCGGCAGAGCAGTTATCTCCTCGCGGGACACGCCCAGTCCCATAGATCCAGACTCCATCCAGGTTCCGGTCCGCTACGAGCCCGACCCGGCCGACCTCGCCCTCTCCAGCGTCCCGGGACAGGAAATCTTCGACCCGCGCAAGCGCAAGTTCTCAGCGGAGGAGCTGAAGCCGCAGCCCATGATCAAGAAGGCCCGCAAAGTCTTCATTCCAGACGACATGAAGGACGACAGATATTGGGCACGGCGCAGAAAGAACAACGTCGCAGCCAAGCGCTCCCGGGATGCTCGCCGGCTGAAAGAGAACCAGATCGCCATCCGCGCGGGATTCCTGGAAAAAGAGAACGCGGCGCTCAGGCAGGAAGTGGCCGACCTGCGGAAGGAACTCGGCCGCTGTAAGAACGTTCTGGCCAAATACGAGGCGCGGCACGGCCCTCTGTGAGCCCCTCCCACCCCAACACAAACCCCGCCCACCTCCACAAAACGCCCCGCCCACCACCACCAACCCCACCCCTCCCCAGGGACTTCAGCGCGCCTCTTTAAGAGGGCGACGTATTCTCCTCTCCGtctttttgtttcgtttcacGTTTCTCTCTTCACTTTTCTCTTTACAAACCCAGTTTGTGTCCTTTAGCTGATTTTTGTATTACATGTATTGCGTGTCTCTTTCCTCTCGCGTAGCCTatctatttccttttatttgttttttcattcgTCTGTTTATTCCTTCGCCAACGATGGATCGTTCGTCTGGAAATGGTTTTCTCGGGAGCGTTTTGTACACCTGTAACACGGACTGATGAATATTTTCCTCGCCTGTCCGTCAATCGACCGCTCTCTGCCCAACCCCCTTTTTCCCCCAGAGGCTCCGCCCACTCCCGGACGACGCTCAAGCTTCTTTTTCGCCGTATATCGATGTGTTTTAGTTGAATAGCTGTAACGCACCGACACCTTTCGTTCCGCGAAGTGCGTAAAACACTAGCTAGCTTCAGAACGCGACGTTTGTCTCTTCGTCCTTTCCCTGTTCAAGTGCGTTCCCTCGGTTTTATTTCAccgtttgttttctttcaaaccAACACCAGCGTAGTTTTCGGCATCTTTCCCGCATCGTCCATGGAGCAATAAGCCTGAATCTCTTCAGAGGGCGAAACACGTGAAATGTAAGCTAGCCCGTTTCGCAGCGCCGTCATTTCTGCCGTAGTGCGCAAACTTTCCCTTCGAAACTTTCCCTCCAGAAATGCTGAATCCATATTcgtctgtctttctgtcccGCTCTAACTCCCTGCACTAATGCGTGTTTCACAATCTGATCTGGTGCAATGTTTCTACCTACACTATAATCTGCCTGatatatttatggattttttttgtttttttcctttcctttttttcgaatggaagaaatttttaaaaaatatcagctGTTAATTGCTACTATTGTTATAGCTGTTCTTATTGTTATGGCTGTATAGTAATTTTTTCCTGATTGTTTTATTGGATATTTCAGCATGACTATTGTTTCAGAGTTGCGACCTAAATCTAATCGTGAATgggtctttttcttttcttcttttttttttttttttcaggatggACGATTGGTCCgtcttctctttttatttttattgctatctattttaattttaattttttacccAGAGCATGttttagaattttcatttgtcaGTGCAAGCGGATATTTGtagtgatttgtttttttttttttttttttttgtttcgtagcaatttctttctttccgtTTCGTAGCTTGGCGTGTCTGTCGGCTGTATGACTGTAATGAATGTGTTATAAGAGGCGTTCGGTGAGCAGGACGGTGTTGTCTCGAATACTGTGGTTGAAATCAGTTTGTTTACTGCAGACCAAAAGATACAGCACAGATTTATTGATAAAACAGagttttaatgttatatatatatatatatgaaatctaTTCTaagttgctttttttgtacagtatttttcCTATATAATACTGTCTGAATATTTTCGAGGCACAACAAATCCAGATTAGTGCAAGATAAATATACGATAGCTTATATATCTATAATTCAGAGCTAAGTGACATAGCGTTTTGATATATTATGAAGAATATAACTGGGAGTAAATGCGAAAACCGCCATCTTGTCCTCTACTTTGGGCATTAAAAACTTCTGCACCCTTTTATTCAAATAGCCTTTAGTATTCTGTCTCAGGGAACGCTAGCAGCCGGACCTCAAACCATAACTcgtaataaatatgaaatatatctatatatatattttgctgtgtttttttttttttaaataggaagGAGCTGCAATTCTCAAGCCTAACTCACACTCTTGATGCCGCGCAATGGTTTCATTGCGGAGCATTTTACAGTATCGCTATTGGTTCTTTGAATGGAAATCTAAAGGCTATGCTTATTTTTAGTCTATTTAATTGAGTCTTTTTTCACAGCAGTGTTGAAACCGAATGTTTAGCGCGGCAGCTCTGAGAGCTTTTGCTTGGTCGAATGTTAGAAAAGTTCGGGGCACACGGTTCCGTAAAAGTTCTTTTGCTGGTCCgagatcagtttttttttattctgttcgTTCTGTTAGAAGCCACAGGGTTTGAACCCGGGACATCTGATCTCAGGTCAGAGGTTGCGTTCGATGCGATGGCGACGTTGTCGACAGCGAAGGTCCTCGTCCGCCCCGGGTTCAGGCCAAAGTTGAGATGTGCACAGGTTTCGTATTATCGAAGATCGATGGGGCAACAAAAAcgaggctgtttttttttattattattattattattgtttaatttaatttccctTGGTTTTCTTTCTCGTGTCTGTTTGTCCGTGTTATAAATGCAGATGTGAGACGCGTGTATAAAGCCCTGTGTAGACTGTTTCTATCTgtgcaaaactgaaataaatccaGGATTAAGCCAAACCGCTTCTCGTGAATAATGACCCCCGAAAATACCTCCCTGAGGGCGTGAAGAAGACCCAAACCAGTTTTCAGCATTTCACCAATATGTCCCTCTCCTTGTTAGAAGAGGTTAAATAGCTTCATCGTTTATGCTTCTATCGTTTGCTATAAAATCATGGAAACACATTGGACACGAACTGTCTACCAGGTTGTATTTGTGACTGGGAAACTGAGTTAATTTTGATACCTAACTTGTGCAAATCATACGTTATAAACATGGCGGAGGAAAGAATCAGTGACGGTTGTAACGGTAGCAAAAATGCGCGCGAAATTTCGAAAACGACCGTTACATTACCTCATCGTCACCGCACGCTGATGtacataatcaaaaaaaaaaaagcagttttcgACGAAACTTCTCAATTTTTTTAGCGTGGGTTATAAACAAACCGGATTATATTCAAAATAAGACGAACGTTTATAAAATGCCCAATGCGTTTTGGCTTCCAAGACGTTATAGccttgaaaaaatattaaaaacgtaATGATTTATATTCGTTCCACATCGCGTTGCTGGATTTGTATCTTTAACCAACtttgaaaatgagaaatttcCGATAGCTTTGGACCAGAAACGACTCAAGCAGGTCGTCGTGTGTTCATTTAAACGCCATATCCATAAActccaaaatgatttttttttgtgcagcaaGCTATTCCGTTTTCCAGGGAAGGACACAGCGGTGGGATTGGTTGAAACTGGTTGGCGTCTCTCTTTGGTAAAATTCACTACCTCAGTCCCGAAAGGAACCTATAACCACATTGAACCTGTTTAGTCCAGTGCCTTAAATTACCACAGACGACtccacacacattttcaaatcttaaaattacTTGGACCTGCGTGGAAAGGGACCCCAAAATCCCACCCTTATTCGACATTAAGCCCAGAATCCAGACGTTTCGTCTGGAAAAGGCAAAGCCCATCGTATTGAAGGCAACACCTGCAGAAGGTCTATGAGAGAGACTGGAAGCTGGAGATGTTTGGTCTTGTGTGTCACGCAAACGGAAGCAGAAACCCGAACCTTTACTCTCTGCTGCCACCTTCTGACTCCTTGTTTATCTGTACATTTAGTGTCCAATAAAGACTTCAGTTTTTCTCTCAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09057 HLF; hepatic leukemia factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24978 lncRNA downstream 889 3503008 ~ 3526848 (-) True G16779
TU24980 lncRNA downstream 2499 3475325 ~ 3525238 (-) True G16780
TU24981 lncRNA downstream 4489 3517813 ~ 3523248 (-) True G16781
TU24943 lncRNA downstream 256428 3270076 ~ 3271309 (-) True G16753
TU24529 lncRNA downstream 880987 2645891 ~ 2646750 (-) False G16475
TU25026 lncRNA upstream 78077 3621489 ~ 3621869 (-) True G16815
XR_006250532.1 lncRNA upstream 240325 3783737 ~ 3786865 (-) True LOC122342142
TU25171 lncRNA upstream 593706 4137118 ~ 4138203 (-) True G16901
TU25199 lncRNA upstream 690963 4234375 ~ 4277855 (-) True G16926
TU25205 lncRNA upstream 721799 4265211 ~ 4267492 (-) True G16930
XM_043235448.1 mRNA downstream 44288 3473444 ~ 3483449 (-) True LOC122341810
XM_043235449.1 mRNA downstream 44292 3473444 ~ 3483445 (-) False LOC122341810
XM_043235450.1 mRNA downstream 44297 3473444 ~ 3483440 (-) False LOC122341810
XM_043235451.1 mRNA downstream 44422 3473444 ~ 3483315 (-) False LOC122341810
XM_043235452.1 mRNA downstream 44441 3473444 ~ 3483296 (-) False LOC122341810
XM_043234886.1 mRNA upstream 43229 3586641 ~ 3607128 (-) True foxk2b
XM_043231175.1 mRNA upstream 70540 3613952 ~ 3616491 (-) True LOC122333516
XM_043235749.1 mRNA upstream 74931 3618343 ~ 3620127 (-) True LOC122341986
XM_043235987.1 mRNA upstream 92535 3635947 ~ 3711514 (-) False LOC122342169
XM_043235985.1 mRNA upstream 92535 3635947 ~ 3711514 (-) False LOC122342169
XR_006250494.1 other downstream 44288 3473444 ~ 3483449 (-) False LOC122341810
TU24952 other downstream 208673 3315438 ~ 3319064 (-) False LOC122333478
TU24533 other downstream 873707 2649842 ~ 2654030 (-) True G16478
XR_006250470.1 other downstream 887646 2631782 ~ 2640091 (-) False nup85
XR_006250471.1 other downstream 1043513 2479128 ~ 2484224 (-) True LOC122341591
XR_006250503.1 other upstream 307940 3851352 ~ 3863851 (-) False LOC122341931
TU25103 other upstream 441255 3984667 ~ 3985667 (-) False LOC122340684
TU25102 other upstream 442828 3986240 ~ 3987431 (-) False LOC122340684
TU25236 other upstream 859685 4403097 ~ 4407697 (-) True G16953
TU25544 other upstream 903968 4447380 ~ 4448881 (-) True G17131

Expression Profile