RNA id: XM_043231175.1


Basic Information

Item Value
RNA id XM_043231175.1
length 1838
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC122333516
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3613952 ~ 3616491 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCATGAGGGCGTTCCCCCAGTGCGTCAGGTGTGTCTCACCTGAGCTCGGCAGTTCTTCCGCTAGCGACGGGAGCCGCAGcatcctcgtcctcctcctGAAGATGACGGCGCGGAGATGCATCGGCAGCTGCCTGCCGTTGTTCGTCATGGCGGTCGTCTTCGACGTCCTCGGCGTGGTCCTGCTGTTCGTCGGGATATTCGGCAACGTGCAGATGCACGGCGTGTTTTACGGGGATTTCCTCATCCACACCGGCGCCCTGGTCTTGTTCGCCAGCCTGGCCCTTTGGCTCATGTGGTACGTGGGGAACATCAGGGTGAAGGATGAGGATTTGGCGCGCAGATCGAGCGCCGCGCGCAGCGTCAAAGAGCTCGCGAGGAAGCTCACGGAGAGGCTGTCCAAAACACACCTGAAGGACAACACGGGTGAGAAATCGGGAAGCAAAGCTTCCACCATTCGAAACGTAACGTGGGGGAAATCCACCTATTTCCCAGGACACAAGGATTCAGAATCGGACATGATCAAATGTGACGAACTATCCAAAGAGAAGCCGGACGACGGTCAGTTCATGTGCTTCCAGAATCAAGGGTACGAGGACGAGGAGCCACGCAAACCAACTCAAGAAGAGCCAGGCGACCAGACCCGCTCTGAAGACGGTTCAGAGTCGGTCGAGGGCAAACGCAATGAAGGGTCCGACGGGAAGAAGCCGGGAAACGATCAGTTCACTTGTTACCAGAACGAAGGCTACGACGAATCAGAACCAGACGTGGCCAAAGGCGGCGAGAAGCCCTCAGATGATCAGCCAGAGAGCATTGACGTTCTGCTGTGAGAAGGGgtGCTAAAACAATGAACGAATAGCCAAGGACCTCCAATAGTCTTCAATCATTTGCCATTACCATCGTTTCAGATGGTAGTGTAGTAAAACCGCTTGAACGTAGTAAAACACAACCGTCTGTCGTTTATACGGGGGAGTTTCTCAACGGCCTGATATAATGCTGCGATACGTTTAATGCGCACCAAATTGGTGACGTGAACTCCTACTTTGCACAAAATTTAACCTCAAAACGGCCAAAAGTCGCGAAGTGCGACTCGGTTACGGcctttgttttttcttgcaCATGCTCATTTGTAAATTCATGCAGCACCTCATGCGTTGTAGGACTCCATTTCCCTTTCAAAGCGGCAGCTGGGCGCTCATGCAAACTCCTCCAGAGTTGAGCCGTTTCGTTTGTTAGCCACAGCAGCGGCCAAACCAGTCCGACGGCAAATAAAGCGGACGGAGTTTATTCACGGGACCTGCCGCTTTATGTAGGTACGCAAGTGAACGTTAAAACCGTAtgtatatgtgaccctggaacatAAAACCAGACATAAGTTAGATGTTTGTAGCAAtggtcaaaaatacattgtatgggtcaaaatgatcggAACCCAAAATcgttaggatattaagtaaagatcctacttcatgaaaatattttctactataatttttgattagtaatatgcattgctaagaactttatttggacaactttgaaGGTCATTTTCTCAAAATTACAAGATTTCTAAATAGTtctatctcagccaaatattgtccataCAGTGGAAAATCAATGGAAATCGTATAATTCAGCTTTAAGGAAACacttgtgactggttttgtggtccagggtgtatatatagatatcaaaatatgcaaaaataggCTTACATATTTTCTAAGAcgtttgaaaagcatttttaatgtaaaaaaaggcatttcctagcctttttaaatgttatgttttttatttttttgcctttaattttccctttcaaatatttcaatacgAGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24978 lncRNA downstream 87104 3503008 ~ 3526848 (-) True G16779
TU24980 lncRNA downstream 88714 3475325 ~ 3525238 (-) True G16780
TU24981 lncRNA downstream 90704 3517813 ~ 3523248 (-) True G16781
TU24943 lncRNA downstream 342643 3270076 ~ 3271309 (-) True G16753
TU24529 lncRNA downstream 967202 2645891 ~ 2646750 (-) False G16475
TU25026 lncRNA upstream 4998 3621489 ~ 3621869 (-) True G16815
XR_006250532.1 lncRNA upstream 167246 3783737 ~ 3786865 (-) True LOC122342142
TU25171 lncRNA upstream 520627 4137118 ~ 4138203 (-) True G16901
TU25199 lncRNA upstream 617884 4234375 ~ 4277855 (-) True G16926
TU25205 lncRNA upstream 648720 4265211 ~ 4267492 (-) True G16930
XM_043234886.1 mRNA downstream 6824 3586641 ~ 3607128 (-) True foxk2b
XM_043233694.1 mRNA downstream 70540 3527737 ~ 3543412 (-) True hlfa
XM_043233695.1 mRNA downstream 70541 3527737 ~ 3543411 (-) False hlfa
XM_043235449.1 mRNA downstream 130507 3473444 ~ 3483445 (-) False LOC122341810
XM_043235749.1 mRNA upstream 1852 3618343 ~ 3620127 (-) True LOC122341986
XM_043235987.1 mRNA upstream 19456 3635947 ~ 3711514 (-) False LOC122342169
XM_043235985.1 mRNA upstream 19456 3635947 ~ 3711514 (-) False LOC122342169
XM_043235986.1 mRNA upstream 19456 3635947 ~ 3711435 (-) True LOC122342169
XM_043235224.1 mRNA upstream 172577 3789068 ~ 3808384 (-) False elac2
XR_006250494.1 other downstream 130503 3473444 ~ 3483449 (-) False LOC122341810
TU24952 other downstream 294888 3315438 ~ 3319064 (-) False LOC122333478
TU24533 other downstream 959922 2649842 ~ 2654030 (-) True G16478
XR_006250470.1 other downstream 973861 2631782 ~ 2640091 (-) False nup85
XR_006250471.1 other downstream 1129728 2479128 ~ 2484224 (-) True LOC122341591
XR_006250503.1 other upstream 234861 3851352 ~ 3863851 (-) False LOC122341931
TU25103 other upstream 368176 3984667 ~ 3985667 (-) False LOC122340684
TU25102 other upstream 369749 3986240 ~ 3987431 (-) False LOC122340684
TU25236 other upstream 786606 4403097 ~ 4407697 (-) True G16953
TU25544 other upstream 830889 4447380 ~ 4448881 (-) True G17131

Expression Profile