RNA id: XM_043235986.1


Basic Information

Item Value
RNA id XM_043235986.1
length 4257
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC122342169
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3635947 ~ 3711514 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGACATCCCGGAGTCGAGCGCGCTGGACTCGTAAGTTCCGCCAATTTCTGCATgcttaaatgcactttttagcTTCTTGATGAATGACTGTCGTACGTCAGAGATAACGCGAGTGGACTGTAATGCGATATacaaACATAATGTAGTCGGTCTTGAACAAGTAGATTTCGAGTTTTAAAACCTTTTCATCTGCTCGACGTGAGATGGGCGTTGTGTAATTGTTGATTTGACTCTATAAGCACTTAGTGCCTTAAAGAATGAGAGTCTTAGGGAGGAGGACTGTCGAAACGATGCTACGCGGGAATGGAGAATGGAGGACCTGCAAGAGTGCGTGACAAGCGGGTCAGCGGCAGTTTGAAGAATTCGTAAAACGAGGAAAAACGCGTACCACCGCTTGAAGCCATGGGGATACGACATCTCCTGCTTCTTTTGGTCTATCTAGACCCACTGTGCGTCCTGAGTGCGTCCACGGCCAAGCGGAGCAAACCTTCTCCAAAGAGACCCCCCAAAGTGAAGGAGGTCAACAGCACCATTGCTCCGACAGTGGCTCAAGTCCAGGCGCCCATTGTCGGCGATCATGACACCTGTTTCGGCTACTACGACGTGAGCGGTCAGTTCGATAAAGAGTTCGCCTGCAACAACACGGACCACCGCTACTGCTGCGGGAGCTGCTTCCTGCGCTTCTGCTGTCCCGTCAAAGCCAAACGAGTGGATCAGAGGGTCTGTACCAACTACAACACGCCCGACTGGATCAAAACCCAACCGCCCTCGCCCGCGCCCACAGGGGACACGTACGACCCAGCGCTGGACCAGACCAACACCACCGTCTACATCACCTGCGGTGTCATCACCCTCATCATCATCCTGGGGATTTCTGCCAAGGTGGCCTATGACAAAGCCACCAGACCGCCTCAAGAAATGAATGTCCACAGAGCACTGGCGGACATTTTGAGACAGCAGGGGCCCATTCCCATATCACAGTATGAGCATGAAAACATTGCGGCTATAGACACCTCGCCCAAAGAAAACACACCTGTACGGACGTCCAAGAACCACTACACACCGgtgcacaacaaaaacaaccacGGGCATTATGGGAAAGAAAACTTCCGCAGTGGTCAGGACATGCACAACTTCATCTCGTCCGGGTTTGTGACGCTCGGCAGGGGCCATCTGAAAGcgCAGCACTCTGTAGATGATCTGGGCCAGCTGTCCTGGCAGGGCGACCTGGACGTTCCTCTGTCCTACAATAACCATCCGCACGACTACACCAGCCATCTGGATCTCACTGGGTCACACACACCCAAAATCGGACACAGAATAGAGCACTACGAGAAACCGAGAATGAACAACATCCTGACGTCCCAGACAGAGCCGTACGACCTGTCCTTCTCCCGGTCCTTCCAGAACCTCACGCACCTCCCTCCGTCCTACGAGATGGCCATGAAAGCAGACTTGAGCGACAAAGACGACGAGTACTACATCCGCAAGCACCATTTGCCCGACCCGACGGCCCGCGGCGGTAACCTGCAGACGCACATGATCAAGCTGAGCGTGGAGCCGCCGGCGCAGCGGCAGAAGCCCAAGCGCGTTCAGCGGGCCATGTCCCAGGACCACGTGCTCTCGCCGGCCCGCTCCAAGCCGCCCCGGGACTACGGCCTGTCGGCGTACAGCGGCGGCGCCGGCGGCCTGTCCCCGTACCACGGACGCATCCTCTCCGAGGAGCAGCTGCTGTCGGCCGACCGCCTGCACTCCCAGGACCCGCTGCTCTCGCCCGACAAGATGCTCTCCCTGCGCCGCTCCAATTTCCGCGAGAAGGCCATGTCTCGGGCGCTGTCGCACACGGACATGTTCGTGCCCACCACGCCGGTCATGGACCGGCACTACAAGATGATGAAGATGCATTCGCACCCCAGCAGCGGCAACAACGAGTCCTACAACACACTGACTGTTAACAGCGCGCAGGCCGGCAACAAAAGGCAGGCGTTCGCCAACCGCCGCATGCATACGGTGGACCACCTGCAGTACATCCCGGGACACCACCATCACCAGTACAGAACCGCCAGTAAGACCGAAGTAACTGTCTGAGAGGCGCGAGAAGCCGGAGAGCGAATGATGTCAACCAACCACCCAGCCGGAGGAATCCCTCTTCGACTTTTCTTGTTCGTTTCAAGCGTCCCGCCTCGACCCGTTCCCCGCTTCCAGCGCAGGCTTTCCACTCCGTCGGGTTTTTTTCGGGAACGATCCGGACTTTCTTCTCGCACGTATAGCGCAAACGCAAGGGCTTCGCGCGCGGACGCCGGACTAGAGACCTCAAACCGTTTTGTTTCCCTCCAGGACTGCTGCGAAGCCTGCACCGACTTTATACGTACAGAAAATCGGAGACTACGTAGATTTATGATTTCTAACTCGAGTCCTAAACAATAGCGATAGCAGTTGAGTATAAACTGGCGTAAGCACTTTAGCGAGTGCCTCTTCTCAAAACACGTCCCGTTTCGGCAACGAAGTGGGGAAAGGGTTTAAAAGCACAATAGATGACTGATGTTGTTTTACTTTCTTTCGTCGCATTCCCAGCTAACAGGGATCGTTTTTAGCGAACATTGTGGAAAAGTTACGAACAAACGTTCTATATAAACGTTGATAGAACATCCGTTCAAAATCACCTGGTGTTTTCAAAGTGTTCTCAAAACTTTAGCATGAAAACACtgtttatgtattgtttatGGAGCATTTTGGCTGGATGATCTATTTTTTGAACATTCAAAATCTtctcaaaattacaaaattgaAGGTTTTTCCCAAAGTTTTTGTGGTTGTTCTTTGAGTAACCTTTATGGGATGTTCGTTCAAACCTATCTGGATTTTAAGAACGTTCTCCAaacattagatttaaaaaaatattatacgcCGTTCACGGAACTTTTGGacatacaacatttttttttaacatttcccAACATTTTTCAAGTTGATCTGTCAACGGCATAGTAATAATTACCACataacacaatttttaatttttttgttgtagttaaaaagctttatttttatttatttacttagttCAAATGgctttctgaaatatttaattggaatgtttttttaacaccgtatgttacatttaaatctcACGGAACATTCTAAAGTAACGTCACGTGCTCAGTTTAgcgaaaatatttaaaatgaaatgttttagttgtttAAGTGCTCCTTTTAAATATCAAAGAGTATCATTTGTTTGCAGAATGATAGAATGAAACATCCCCTTCTCGTTGAACTGTATTTTGTAGTTCTTCTTCCGGTAACATTTGTTCAACACTCTCTGGTCTAATGTTCTTAAAATGTTcgcataaaaacattatttcacgGAACATGTCTTTACCTGGACACCTGTCTTCTgttaatgttacttttgaatgtCAGAGAACAATTAACAGTACCATcgtttttacaaaattataaaacaatgttCGTATaacgttttttaaatgttacttttcaatgtcatagaaaattaaaaatgaacgtTCCCATCATGTTCGCGTAATAAAACGGAATGTTCCCTCATTGTTTTTCAAGTTAAGGTCCGTCAAAAGCATTCGTAGTTGTTCTTCCAGTAATGTTAATAGAACGTTTGTTCAAAGCGCCGTTCTTTAATCATGTTCTTTTTAGAATGTCACAGAACTTTCAGAAGTAAAATTCTCGTCATCTCtagaaaataatcaaatgttatGTGATGCTTTAGCTGGACGTCAAAAGTAACGTTCCCATGATGTTTGCAAAATTATAAAACGGAATGTTCCTACGACGTCTGCGTAACCGAGAAACAAACGTTTTGAGCGAAATTGACATGAACTGGGCATTTAGAGGAcgttcagaaataaaaaaaaatttataaccTAATAACAACGTTAGCAGAACATTCCTAGAACGCATCTTTGTTAGCTGGGTGGTCTCTGTTTGGTTTCTGAGTTTTTAGTGCACCTGTGACAGTGTTTCATTCGGCGTAGGTGATGTGTAAATACGCTCGGTTAGCTGCAGATAAAGTTGGCTTTGTGGGTTATGGGTTGCTTTTTGCTGTTTCATTGTTTCCTTTCAGACATTTTCTAGCATAATCAAACCACACGAAGTATATCTGACGACACAAATGTGTacagcaatgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgttttataatcTGTACTTGTAGACTAATGGTGAATAAATCTGGTTGATTCAGCCATTCATACGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25026 lncRNA downstream 14078 3621489 ~ 3621869 (-) True G16815
TU24978 lncRNA downstream 109099 3503008 ~ 3526848 (-) True G16779
TU24980 lncRNA downstream 110709 3475325 ~ 3525238 (-) True G16780
TU24981 lncRNA downstream 112699 3517813 ~ 3523248 (-) True G16781
TU24943 lncRNA downstream 364638 3270076 ~ 3271309 (-) True G16753
XR_006250532.1 lncRNA upstream 72302 3783737 ~ 3786865 (-) True LOC122342142
TU25171 lncRNA upstream 425683 4137118 ~ 4138203 (-) True G16901
TU25199 lncRNA upstream 522940 4234375 ~ 4277855 (-) True G16926
TU25205 lncRNA upstream 553776 4265211 ~ 4267492 (-) True G16930
TU25204 lncRNA upstream 555268 4266703 ~ 4267492 (-) False G16930
XM_043235749.1 mRNA downstream 15820 3618343 ~ 3620127 (-) True LOC122341986
XM_043231175.1 mRNA downstream 19456 3613952 ~ 3616491 (-) True LOC122333516
XM_043234886.1 mRNA downstream 28819 3586641 ~ 3607128 (-) True foxk2b
XM_043233694.1 mRNA downstream 92535 3527737 ~ 3543412 (-) True hlfa
XM_043235224.1 mRNA upstream 77633 3789068 ~ 3808384 (-) False elac2
XM_043235220.1 mRNA upstream 77633 3789068 ~ 3808384 (-) False elac2
XM_043235222.1 mRNA upstream 77633 3789068 ~ 3808384 (-) False elac2
XM_043235221.1 mRNA upstream 77633 3789068 ~ 3808384 (-) False elac2
XM_043235223.1 mRNA upstream 77633 3789068 ~ 3808384 (-) False elac2
XR_006250494.1 other downstream 152498 3473444 ~ 3483449 (-) False LOC122341810
TU24952 other downstream 316883 3315438 ~ 3319064 (-) False LOC122333478
TU24533 other downstream 981917 2649842 ~ 2654030 (-) True G16478
XR_006250470.1 other downstream 995856 2631782 ~ 2640091 (-) False nup85
XR_006250471.1 other downstream 1151723 2479128 ~ 2484224 (-) True LOC122341591
XR_006250503.1 other upstream 139917 3851352 ~ 3863851 (-) False LOC122341931
TU25103 other upstream 273232 3984667 ~ 3985667 (-) False LOC122340684
TU25102 other upstream 274805 3986240 ~ 3987431 (-) False LOC122340684
TU25236 other upstream 691662 4403097 ~ 4407697 (-) True G16953
TU25544 other upstream 735945 4447380 ~ 4448881 (-) True G17131

Expression Profile