RNA id: XM_043235224.1


Basic Information

Item Value
RNA id XM_043235224.1
length 3194
RNA type mRNA
GC content 0.53
exon number 24
gene id elac2
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3789068 ~ 3808384 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCATCAGCAAGCGTCGGAAGTGCGTCCAGCGTCAACACACGCGCGTGAGTCCCCCGAGCCGCCGCTCCTCGCGCAAACAAGCGGTCTGTGAGGTTCGCGTGCGACGACCCGCTCCTCTCAGCCGCGGCGCGTCGCGTCGACAAACGTTATGCTTTCGCGTCTCTGCGCACTCGGAGCGCTGGGAGCGTGTAAAGAGCCCGTGCCGCAGAGAGCCGCCAGACTGATGCAGACCCAGTCCTCCAGGAAGGCCAGGGCTGTCAGGGACACCCTGCGCCATGTGAAGGCGAAGGAGGGCCGCAGGCAGGGCGAGCTGCACGGGCCCTCCACCGTCTATGTGCAGGTGGTGGGCTCCGGGAGCAGAGACAACGGGGCCTCTCTTTATGTCTTCTCCGAGTACAACAGGTATCTGTTTAACTGCGGCGAAGGAACGCAGAGGCTGATGCAGGAGCACAAGATAAAAATCGCAAGCTTGGACAACATCTTCCTGACCAGGATGAGCTGGGAGACGGTCGGCGGTTTGTCAGGCATGATCCTGACCCTCAAAGACACCGGGGTCCCTCAGTGCGTCTTCTCAGGACCCCCGCAGCTGGAGAAGTATTTGCAAGGCATTCGAGTGTTTTCGGGGCAGCTGGAAGGCATTAAACTTGCTATCAGACCGTATACAGAACCTCAATATAAAGACGACACGATGACCGTCAGCCAAGTCCCTCTCTTCTCTGGGCgtaaggaggaggaggaggacgccGGCGGTTCTCCAGGCTCTGGACACGGCAGCAGTCCCAGCGGTGGCCAGAAGGGGGCGTTCAGGAGACAGGACCAGCACGGGGACGAAGACAAAGAAGCGTTTACTAGAGACTCGTCTTTCGTGGTGACCTACGTGTGCAAGTTGCTCTCGAAGAAAGGAAACTTCATGGCTCTGAAAGCTAAAGAGATGGGCCTGCCGGTAGGAACGGCGGCCATCGGGCCCATAATCGAAGCTCTGAAAGCCGGAAGAACTGTGACGTATGAAGGAAAAGAGATCCGGCCCGAGGAGCTGTGCACCCCGGCCGATCCCGGACCTGTTTTTCTAGTCGTGGACTGCCCGTCAGACGACTTCGTCCAGCCGCTCTGCACCAATCGCGTCTTACAAAGgtatCAGACGGGGGGATCGGAGGATTCGGCGGCTCTCGTGGTTCACATGACTCCCGAGTCAGTGTTGGACACGGAGGAGTACAAGAGCTGGATGGAGAGGTTCCCCAGCAGCACTCAGCATCTGTTGATGAATGAGCAGACGTTCACGACACACAACACCCGCAGTCACAAACTCCAGACGCAGCTCGGCCTCATCCATCCTGACATCTTCCCTCCGCTCAAACTCTACAAGACCAAAGAGCCGCCGGCTTCTCTCCTCGTTCCTACCGTCAGAGCCGAGTGTCTGATCAAGTTTCAGCTCCGGCCCAAACTGGAATGGCAAAGagatgCCATCCTGTCCTGCGACTCTGAGGAGTTCGTGAAGGAAGCAGCCGAAGTGCCAAACTTCTTAGAGGAAGTTGAGGAATGCAGGAAGTTCCAGGCGGCTGCGTCCGTCTCCTCGTCTGGTGAGAGGTTTCCGGAGATTGTGTTTCTGGGCACCGGCTCATCTCTACCGATGAAAATCAGAAACGTCAGTGGAACTTTAGTTAACATCAGCTCGTCTCAGTCGCTGATGCTGGATTGCGGCGAGGGAACGTTCGGTCAGTTGTGCCGTCATTACGGCGAAGACGTGGACGAGATGCTCTCCAGACTCTCCACCGTCTTCGTGTCGCACCTTCACGCAGATCATCACACGGGTTTGATTCATTTGTTACTGGAGCGAGAGCGAGCTCTGAAAAGTCTCGGTAAAGCGTTCAGTCCCGTGTTCCTGATCGCTCCCGTCCAGATCATGTCGTGGCTGAACCAGTATCACCGTCACTGCCAGCAGATCCTCAGACAGATCAAGTTTATCCCATCAAAGTCTTTGTGTGAAGGCGCTGAGGTCCCCAGAGTCGACAACATTCAGGCTGTTCTGAAGAAGAACGACCTGCTCAAGTTTCAGACGTGTTTTGTCCGTCACTGTAAGAACGCGTTCGCCTGCAGTTTGACGCATCAGTCTGGCTGGCAGCTCGTGTTTTCTGGAGACACCATGCCCTGCGATGCCGTCGTTAATATGGGCAAGAATGCAACACTTTTGATTCATGAAGCCACTCTGGAGGACGGGATGGAAGAAGAAGCGCTCGACAAGAGACACAGCACCACGTCTCAGGCTATCGGCATCGGGATGAAGATGAACGCTGAGTTCATCGTGTTGAATCACTTCAGTCAGAGGTACGCCAAGATCCCTCTCTTCAGCGAAGACTTCAACAGCAAAGTGGGGATCTCCTTCGACCACATGAGGATCCGATTTGGAGATTTCCAGATGCTTCCACGGCTCATTCGGCCTCTGAAGGCATTGTTTGCAGAGGAGATTGAAGAgatggaggagaggagagaaaagagagagatgaagagagagtCCGGAACAAGCCGACAACCTGATGAGATGAGCAAAGGTGCCAAGAGAGAGCAAGATGACCTCAACCAGAAACCGGCAATCAAACGACTTAAGACCCATTGATGGACATCCAATCAGGGTGAAGGTTAGATCAGCCCAACCAGTCAGGCAGGCTTGGGAAAAACTAAACCAATGGGTTATGATCTTAAAATGTACATCGTAAGTGCCATGTTGGGTGGAAGTCTGCAGGGTCCAATTGGAGAAGGTGAGATTAAAGCAGCTGAAGATTTTGAGTTTTAAGCCAAAACTAAAATGCAGCTTATTGGTTCGTGGCCGGGATCAGATCTGGAGTCAGTCCCGCTGCGATCGATTTTGACTAAAGTGATAGTGGGAAAGAACACTACCTTAAACCTTTGAATGTTTGTCACTTTAATTTCAGCCCTCCAGACTGTTTAAACCcgaaacagaaacattttggCGCTAAAGGAAGACGTTAGGTTTGGCATTTTATTTCGGGAATGAAGCAgagtttcagtttagtttgaTTCGGgtaggttttttgtttttttgcaagtaAACTGATTGCAGTGGTGTGTGAAAAAAGCACTTGTACATTTCTGTATGAACTATTTTATGTCTATGAAATGGCTGATCAGCTTAGgcttttctaattattttagggaaataaacaaaaactggcAAACTG

Function

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250532.1 lncRNA downstream 2203 3783737 ~ 3786865 (-) True LOC122342142
TU25026 lncRNA downstream 167199 3621489 ~ 3621869 (-) True G16815
TU24978 lncRNA downstream 262220 3503008 ~ 3526848 (-) True G16779
TU24980 lncRNA downstream 263830 3475325 ~ 3525238 (-) True G16780
TU24981 lncRNA downstream 265820 3517813 ~ 3523248 (-) True G16781
TU25171 lncRNA upstream 328734 4137118 ~ 4138203 (-) True G16901
TU25199 lncRNA upstream 425991 4234375 ~ 4277855 (-) True G16926
TU25205 lncRNA upstream 456827 4265211 ~ 4267492 (-) True G16930
TU25204 lncRNA upstream 458319 4266703 ~ 4267492 (-) False G16930
TU25209 lncRNA upstream 506797 4315181 ~ 4315571 (-) True G16933
XM_043235987.1 mRNA downstream 77554 3635947 ~ 3711514 (-) False LOC122342169
XM_043235985.1 mRNA downstream 77554 3635947 ~ 3711514 (-) False LOC122342169
XM_043235986.1 mRNA downstream 77633 3635947 ~ 3711435 (-) True LOC122342169
XM_043235749.1 mRNA downstream 168941 3618343 ~ 3620127 (-) True LOC122341986
XM_043231175.1 mRNA downstream 172577 3613952 ~ 3616491 (-) True LOC122333516
XM_043235089.1 mRNA upstream 6497 3814881 ~ 3828692 (-) False map2k4a
XM_043235091.1 mRNA upstream 6497 3814881 ~ 3828691 (-) False map2k4a
XM_043235095.1 mRNA upstream 6497 3814881 ~ 3828691 (-) False map2k4a
XM_043235093.1 mRNA upstream 6497 3814881 ~ 3828691 (-) False map2k4a
XM_043235090.1 mRNA upstream 6497 3814881 ~ 3828691 (-) False map2k4a
XR_006250494.1 other downstream 305619 3473444 ~ 3483449 (-) False LOC122341810
TU24952 other downstream 470004 3315438 ~ 3319064 (-) False LOC122333478
TU24533 other downstream 1135038 2649842 ~ 2654030 (-) True G16478
XR_006250470.1 other downstream 1148977 2631782 ~ 2640091 (-) False nup85
XR_006250471.1 other downstream 1304844 2479128 ~ 2484224 (-) True LOC122341591
XR_006250503.1 other upstream 42968 3851352 ~ 3863851 (-) False LOC122341931
TU25103 other upstream 176283 3984667 ~ 3985667 (-) False LOC122340684
TU25102 other upstream 177856 3986240 ~ 3987431 (-) False LOC122340684
TU25236 other upstream 594713 4403097 ~ 4407697 (-) True G16953
TU25544 other upstream 638996 4447380 ~ 4448881 (-) True G17131

Expression Profile