RNA id: XR_006250468.1


Basic Information

Item Value
RNA id XR_006250468.1
length 2711
RNA type transcript
GC content 0.56
exon number 19
gene id pkn1b
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2182526 ~ 2210233 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCTCGTCTCTGAGCAGGAAGTTGGTCGAGAGATTTCAAAAGCGAACCATCCGCGTgccctggtgtgtgtgtgtgtgtgtgtgttcctgcagTCGTCTCTTGTGTGTCATGTAGAGATTAACAGGAAGCTGTTGCTGTGGCTCTCTGTGAGCGGAAGCCATCGCAGTACGTGGTGTCAGTGCCTCTAAAAACAGACAGAAGCGTGTTTGATCTGAGAGGAGAGGAGCTGATGGACAGTGAAGGAGACGCTGGAGATTGTTCGCTGGAGGAGTTTCCCTCGAGCCCAGCGGAGGCCGAGCATGTGGATTCGGATGGTTTTTCCGTCCTGGAGCAGCTGGGACTGGACCAGAACTCAGATTTGTCAGACTCCTGCGTGCAGCAGCGGTTGGACGAGCAGCGAGAGAAGATCCGGAGGGAGATCCGTAAGGAGCTGAAGATAAAAGCGGGCGCGGAGAACCTGCGACGGGCCACCACCGACAAACGCAACGCCCAGCAGGTGGAGAGCCAGTTACGCAGCTCCAGCCGCAAACTAGACACGCTCCACGCTCAACTGCAAGAGCTGGATGCCCACATCGTGGTCAAGGGTCACGACGACAGCAAAGATGACCTTCAGTCTCTCGGGACGCCAGGTCGCTCCTCAGCCAATCAGGACAGGATTAAAGCTCTGGAGCGACAGCTCAACATTGAACTCAAGGTCAAACAGGGGGCAGAGAACATGATCCCCATCTACGCCAATGGGGTTACCAAGGATAAAAAGCTGCTCCAGTCAGCTCAGCAGATGCTGCAGGACAGTAAAACGAAGATCGACATCATCCGTATGCAGATTCGTAAAGCCATGCAGGCCACCGAACAGACAGAAGACACTCAGGgtAAGCCGGATCTGTGTGGGGTGGAGCTCCGTATCGAGGAGCTCTGGCATCATTACCGTGTTGAACATGCCATGGCCGAGGGCGCCAAAAACATGCTGAGGCTTCTGGGAGCTGGAAAAGCACAGGACAAGAAGGCCATTGCTGAGGCTCAGTCTCGCCTCAGCGAAGCGTCCCAGCGCCTAGATCTTCTGCGGGTGTCGTTAGAGCAGCGTTTGGTCAGTCTGCCGGAAGACCATCCCAAAGTGTGTCTGATCAAGGAGGAGTTAGTGCTGGCCTCGTCGTCGGCCTTCAGCTCTCGTCACAGCGCCCCCTATGTCCACAATCAGTACAGCACCCTCAGCAAACCGTCGCCGCTCACCGGGACGCTGCAGGTGCGTCTGCTGGGGTGCGTGGGCTTGCTGGAGGTGGTCCCGGGCCGCAGTCGCACCTCTCCGCTGGTCTTACCTCACAGTCCCGGGGACGGACGGCCCTTCAAGCTCACTCTGAGCAGCAGAAACAGCAGCTTCAGCCTGAAGATTCCCAGCAAGAGCGAAGAGCTGTCCTCGGAGGTGAGCGCCGTGTTGAAGCTGGAGAACTGTGTGGTGGGACAGACGTGCTGGAAGAGTGTGGGGGAACAGACCTGGGATCAGACCTTCACTCTGGAGCTGGAGAGATCCAGAGAGATGGAGATCGCCGTGTACTGGAGGGACTATCGCTCGCTCTGTGCTCTCAAGTACCTGAAGCTGGAGGACTTCCTGGACAATCAGAGACACAGAATACAGCTGGAGCTCGAGCCTCAGGGACTGCTGCTCGCCGAGGTGATGTTCTTCAACCCTGTGATAGAGCGAGGTCCACGTCTCCAGCGGCAGAGGAAGGTGTTTTCCAAACAGCAGGGTAAAGCGTTCCTGCGAGCCAAACAGATGAACGTAGACATGGCGACGTGGGTTCGTCTGCTGAAGAACGCCATCCCCTTGAGCTCCTCCACACACAGCTTCACACACCACAGCAGCAGTGAGATTTCCGTCCAGAAGATCCAGCTGGACGCTGACTCTCCTCCGTCCGCGACgaggaaaaacacacagacgTCAAACGCGGTGGACGTTAGCCCAGTGTCCGAGCCGGTCTCTCCTCCTGATCCTGCTCCTCCGGAGAGGGTTGTCAGGAAGAGTTCCCATAACTCCCAGCGCAGgccgTCCAAAAGCTCTCTGTCTCTTCAGGATTTCCGAATGATCGCAGTGCTGGGCCGAGGACATTTTGGCAAGgtGCTGTTGTCTGAATACAAACGCTCAGGGAAGGTGTACGccatcaaagcactgaagaaAGGGGACATCGTGGCACGGGACGAGGTGGAGAGCTTGATGTGCGAGAAGCGAATCTTCGAGACGGTGAACGGCGCACAGCATCCGTTCCTGGTCAACCTGTTTGCGTGTTTTCAGACGTCAGAACACGTGTGTTTCGTGATGGAGTACACGGCCGGCGGAGATCTGATGATGCACATACACGCCGACGTCTTCTCTGAAACACGCTCTGTGAATGGGTCATGGCGACAGAACCAGTACATTTTGTGGGACTCCGGAGTTTCTTGCTCCCGAGGTTCTGACAGACACGTCCTACACCAGAGCTGTGGACTGGTGGGGTCTTGGTGTGCTCATTTACGAGATGCTGGTTGGAGAGTCACCGTTCCCAGGTGACGATGAGGAGGAGGTGTTCGACAGCATTGTAAACGATGAAGTACGTTACCCAAGATTCCTCTCTACCGAGGCCATTGGTATCATGAGACGGCTGCTGAGGCGTAATCCTGAGAGACGACTAGGCTCCAGCGAGAAAGACGCAGAGGACATCAAGAAACAACCCTTCTTTAGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250527.1 lncRNA downstream 44086 2136069 ~ 2140359 (-) True LOC122342126
TU24376 lncRNA downstream 58727 2125316 ~ 2125718 (-) True G16385
TU24108 lncRNA downstream 182874 2001274 ~ 2001571 (-) True G16217
TU24071 lncRNA downstream 242350 1727333 ~ 1942095 (-) True G16192
TU24102 lncRNA downstream 246687 1930044 ~ 1937758 (-) True G16212
TU24391 lncRNA upstream 36729 2239298 ~ 2240445 (-) True G16393
XR_006250484.1 lncRNA upstream 60102 2262671 ~ 2265631 (-) True LOC122341671
TU24405 lncRNA upstream 93538 2296107 ~ 2354938 (-) False G16400
TU24406 lncRNA upstream 93538 2296107 ~ 2355467 (-) True G16400
TU24407 lncRNA upstream 96468 2299037 ~ 2358165 (-) True G16401
XM_043230546.1 mRNA downstream 7492 2165727 ~ 2176953 (-) True engl
XM_043235428.1 mRNA downstream 29417 2148296 ~ 2155028 (-) False si:ch211-106h11.1
XM_043235427.1 mRNA downstream 29417 2148296 ~ 2155028 (-) False si:ch211-106h11.1
XM_043235426.1 mRNA downstream 29418 2148296 ~ 2155027 (-) True si:ch211-106h11.1
XM_043235429.1 mRNA downstream 36300 2142234 ~ 2148145 (-) True ddx39ab
XM_043234770.1 mRNA upstream 9597 2212166 ~ 2238246 (-) True wu:fb95e10
XM_043235182.1 mRNA upstream 41322 2243891 ~ 2253235 (-) False mcoln1b
XM_043235183.1 mRNA upstream 41323 2243892 ~ 2253448 (-) False mcoln1b
XM_043235184.1 mRNA upstream 41323 2243892 ~ 2253234 (-) True mcoln1b
XM_043235180.1 mRNA upstream 68029 2270598 ~ 2290362 (-) False LOC122341666
TU24084 other downstream 184116 1788245 ~ 2000329 (-) False zc3h7ba
TU24079 other downstream 184305 1788245 ~ 2000140 (-) False zc3h7ba
TU24082 other downstream 184305 1788245 ~ 2000140 (-) False zc3h7ba
TU24085 other downstream 184305 1984597 ~ 2000140 (-) False zc3h7ba
TU24091 other downstream 334336 1847123 ~ 1850109 (-) False LOC122333107
TU24410 other upstream 100758 2303327 ~ 2362399 (-) True G16402
TU24428 other upstream 130987 2333556 ~ 2423546 (-) False LOC122341602
TU24448 other upstream 241499 2444068 ~ 2450203 (-) True G16421
XR_006250471.1 other upstream 276559 2479128 ~ 2484224 (-) True LOC122341591
XR_006250470.1 other upstream 429213 2631782 ~ 2640091 (-) False nup85

Expression Profile