RNA id: TU24407



Basic Information


Item Value
RNA id TU24407
length 649
lncRNA type sense_over
GC content 0.47
exon number 2
gene id G16401
representative True

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2299037 ~ 2358165 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AAAAGCTGTCTTTTCtggtgtattattattattatgattatcatCATCTGACCTGCAGGTTGGACTGGACCATCTCGCTGTAGTTGAACTCGGCGGATCTCTGCTCGCTCGGTTCTGAGAGACTCAGGTTGAGGCGGACGGTGGGTTTGGGTTCGCCGGGGTCCGATGCCGGTTTCCCGGTACCGAACAGCCCCCCTCCGCCGCCGGTGATCCCGGGACTCGGTTGATTCTCTTCGTCCTCCCGCCGACGCTTCTTTGACTCGGGCGCCGCCGGCGTGCTGCTGAACGAGGCGAGCGTGACGAACGGAACTTTCCTCGGGTCCGCCATCGGACCGACTCTCTCCGGTTCTGCTCGAGCCCGGACACACGGGCGCTCCTGGCTGTTAGCTTGAGCTAAAATTAGCGCTTACGCCGTTAATCAGCGCTCCGGCGACGGCTCGGGACGAAACGAACTCCGCTCGGCGTTATATGACAATCCCTCGCAGCTTTCGCGTCGCATCCGTTTCATTTAGTCGAGCGCGAGAGTAGtttttgtctctctgtgtgAAATCTCAGCAGCATCTGTAGCGGCCATTTTCACTAGCAGTAAATACAGGATGAGGCGGCGGGGTCACTGAGCGTGCGCGGTGCGCGCGAGGCTGGAGCGCCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006250484.1 lncRNA downstream 33406 2262671 ~ 2265631 (-) True LOC122341671
TU24391 lncRNA downstream 58592 2239298 ~ 2240445 (-) True G16393
XR_006250527.1 lncRNA downstream 158678 2136069 ~ 2140359 (-) True LOC122342126
TU24376 lncRNA downstream 173319 2125316 ~ 2125718 (-) True G16385
TU24108 lncRNA downstream 297466 2001274 ~ 2001571 (-) True G16217
TU24438 lncRNA upstream 23988 2382153 ~ 2383078 (-) True G16413
XR_006250472.1 lncRNA upstream 35236 2393401 ~ 2420547 (-) False LOC122341602
TU24423 lncRNA upstream 57694 2415859 ~ 2423546 (-) False LOC122341602
TU24426 lncRNA upstream 57694 2415859 ~ 2423546 (-) True LOC122341602
TU24480 lncRNA upstream 156602 2514767 ~ 2515661 (-) True G16440
XM_043235180.1 mRNA downstream 8675 2270598 ~ 2290362 (-) False LOC122341666
XM_043235179.1 mRNA downstream 8675 2270598 ~ 2290362 (-) True LOC122341666
XM_043235183.1 mRNA downstream 45589 2243892 ~ 2253448 (-) False mcoln1b
XM_043235182.1 mRNA downstream 45802 2243891 ~ 2253235 (-) False mcoln1b
XM_043235057.1 mRNA upstream 13523 2371688 ~ 2374087 (-) True trir
XM_043235024.1 mRNA upstream 16448 2374613 ~ 2391111 (-) False hook2
XM_043235023.1 mRNA upstream 16448 2374613 ~ 2391111 (-) True hook2
XM_043235049.1 mRNA upstream 69780 2427945 ~ 2435535 (-) True rtbdn
XM_043235050.1 mRNA upstream 120963 2479128 ~ 2484230 (-) False LOC122341591
XR_006250468.1 other downstream 96468 2184445 ~ 2202569 (-) False pkn1b
TU24084 other downstream 298708 1788245 ~ 2000329 (-) False zc3h7ba
TU24082 other downstream 298897 1788245 ~ 2000140 (-) False zc3h7ba
TU24448 other upstream 85903 2444068 ~ 2450203 (-) True G16421
XR_006250471.1 other upstream 120963 2479128 ~ 2484224 (-) True LOC122341591
XR_006250470.1 other upstream 273617 2631782 ~ 2640091 (-) False nup85
TU24533 other upstream 291677 2649842 ~ 2654030 (-) True G16478
TU24952 other upstream 957273 3315438 ~ 3319064 (-) False LOC122333478

Expression Profile