RNA id: XM_043235024.1


Basic Information

Item Value
RNA id XM_043235024.1
length 3354
RNA type mRNA
GC content 0.52
exon number 22
gene id hook2
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2374613 ~ 2391111 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTCGCTATGTTGCTATGGCGACCTGCGTTCTCGCGGCGCGTCGGTGACGCGTCAGTCCGCTCGAGCGCATTTAGCGGCGCTGCTAGCGAGGAGCGGCGCAAACCGGCACCATGAGCCTCAATAAACACCAACTGAGCGACTCTTTATTCATCTGGCTGCAGACGTTCCAGGTGCCGTCGTCCTCCAGCAAACACGAGCTGACCAGCGGCGTGGCCATCGCTCATGTGCTCAACAAAATAGACTCGTCCTGGTTTAATGAGACGTGGCTCAGCAGGATAAAAGAGGATGGCAGCACAAACTGGAGGCTgaagGTCAGCAACCTCAAGAAGATCCTGCAGAGCATGATGGAGTATTATCATGATgtgctGGGTCAGCAGGTGTCCGACCAGCACGTTCCTGACGTGTGTCTGATCGGGGAGATGGGGGACGTGACTGAACTGGGTCGTCTGCTTCAGCTGGTTCTGGGCTGCGCCGTCAGCTGCGATCAGAAACAAGaGCACATCCAGCAGATCATGACTCTGGAGGAATCAGTGCAGCACGTCGTGATGACGGCCATACAGGAGcTGCTGGCCAAAGAGCCCGCGGAGGCCGGAGCTCCAGAGACGTACGGGGACTTCGACAGTCAGTCCAGGAAGTACTATTTTCTGAGTGAAGAGACGGACGACAGGGACTCGACGAGCCAGCGCTGCCGGGAGCTCCAGCGGCAGgtgtctGTCCTGATGGAGGAGAGGTCCTCGCTGCAGGCGGAGCTCCAGTCTCTGCGCGAGCGGCTCAGTCACAGCGAGACGCCCGACGTCTCCTCCACCATCACCAACAagaagctgctgctgctgcagagtCAGATGGAGCAGCTGCAGGAGGAGAACTACAGgctgGAGAGCAGTCGGGACGACCTGCGAGTGCGAGCTGATGTTCTGGAGCGAGAGCTGACGGATCTGCAGCTGAGGAACGAGGATCTCACCAGCCTCGCTCAGGAGGCCCAGTCCCTCAAAGACGAGATGGACATCCTCAGGCACTCGTCTGACCGCGTCAGTCGCCTGGAGGCTCTGGTGGAGACCTACAAGCGCAAGCTGGAGGACCTGGGCGACCTGCGCAGACAGGTGCGTCTGCTGGAGGAGAGGAACCACGTCTACATGCAGCGCACCTGTgagctggaggaggagcagcGGCGGGCCAACGCCATCCGCTCGCAGCTCGACACCTACAAGAGACAGGCTCACGAGATGAGCGCCAAACACTCGGCCGAGGCCATGAAAGCTGAGAAATGGCAGTTTGAGTACAAGAACCTCAGCGACAAATACGAGACGCTTCTGAAGGAGAGAGAGAAGCTGATATGCGAGCGAGACTCATTCAGAGAGACGACCGAAGAGCTGAGGTGTGCTCAGGTCCAGCAGCAGTGTTTAACAGATTCTCTGAGCGCTGATTCAGGAGCCGTGGGCAGCCTGGCGGCAGAGATCATGCCCACAGAGCTCAGggacACAGTTGTGCGTCTGCAGCAGGAGAATAAGACGCTGTGTGTTCAGGAGGAGTCGTACAGACACAGACTGGAGGAGCTTCAGACGCAGCTGGAGGATTCACAGCGCAGCCAGAACACACTCGAGACGCAGAAccggcTGAGTCAGCAGCAGATCTCAGAGCTGAGTGCTCAGGtggaggagctgcagagagCTTTACAGGACCAGGATAGCAAGACCGAGGATTCGTCTCTGTTGAAGAAGAAGCTGGAGGAGCATCTagAGAAGCTCCACGAGGCTCATTCTGACCTGCAGAGGAAACGAGAGGTGATTGATGATCTGGAGCCCCATGTGGACAGCAACATGGCGAAGAAGGTCGACGAGCTGCAGGAGATCCTGAAGAAGAAGGATGAAGACATGAGGAGGATGGAGGAGAGATACAAGAGATATGTGGAGAAAGCTCGCACCgtcatAAAGACTCTAGACCCCAAGCAGAAGTCCAGCCCGGTTCCTGCTGAAGTTCAGGCGCTGAAGAACCAGCTGACAGAGAAGGACCGGAAGATCCAGCACCTGGAGcatGATTTCGAGAAGACGCGCTCCAGACATGATCAGGAGGAGAAGCTCATCATCTCAGCCTGGTACAACATGggcATGGCTCTTCATCAGAAGGTGGCTGGAGAGCGCTCCGGCTCCGCTCCGGCTCAGTCCTTCCTCTCCCAGCAGAGACAGTGGACTCAAGCCCGGCGAGGCCTGTCCCGTCCGCAGCCCAGATAAACCCCTGTCCTTTTATCAGTGTGTTTTAGACCAGGTTTAGTCGTTTTTAGTTGTAGCCGGAAAGCCTTGCGCTCCGTGAAGCAGATCAACCTTCGTttcttttaaagctttaaagtgtttttactgtagttGGGTGTCGATCGGGGTTACGGTGCACTTTACACACTCGGTGCCTTCAGCCATCCAGAAACCAGACGCTCTGCGCTGGAGCCTTGAACGCCACGAACAAATCCAGAGCTTTCGTCAGGATCTTTCCAGAGAGCCGCTGTGGTTTAGTGAACGCTCATCACGGATGGACCGCTGGAGGAGCGCGAGTTCCCACCAGTTGCTGCTCGATTTCGTTTTTATCTCGTCGTTGTTTCGTTTTGGCAGAAATACACTACCGACTGAACACTGTGTTCTGGCCCCCGTCGGTCCGGGCCGAGCTTCGTTCGTTTgctttttgttcgttttttggGTCACGGTGCTGATGTTCACGAGTTGTTTGCGTGTTTCTCACGGCGTTTTCCTCGTTCGCTCGGGACCGATGGGGGCGCTACGGAAATGATCACTTTAGTCTCACCCTTCTTCTCTTTGCACTACAATAAAAGAGGTTATCGGTACGAAATGCTGTGACATCTGTGTGTTGAAGTGAGTGGATAATGAACCGTTTTATCAAATGAAATGCTGAACGAAATGCTGAAGTCGGACGAATAAGTCGATTTATCGTTGGTCCGTGACTCCTGTTTGCATTAAAGATACTGACATCGAAGAATTAACAGAACACTTCTGAAATAAGATGAACGTTTTGTAATATTAGCTTATTAGTAGCATACCTTttcatatttatgatttatggtTTTAATATGTCTGCTTCCGAATATAATCATGATCATTCAACTAATGCATAAAAGACTGCATTGCTGTAAACATCACATTAAATGTGTAAACTGTTTCCAGGTATTACTCTATACTGTGGTACTGTACTGTCAGGTGTGTTATTTAAATCAACTTAATTCTAACTTtaagtgcattcattttaatcaaattgtattatttttttaaatcaggtttAGCTAGATGACGATCTTATTTTATCACTCACGGTATACCGAACTGTTCTGTGtattaaagcatttcatttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24417 lncRNA downstream 543 2314559 ~ 2374070 (-) False trir
TU24414 lncRNA downstream 10044 2305249 ~ 2364569 (-) True G16403
TU24407 lncRNA downstream 16448 2299037 ~ 2358165 (-) True G16401
TU24406 lncRNA downstream 19146 2296107 ~ 2355467 (-) True G16400
TU24405 lncRNA downstream 19675 2296107 ~ 2354938 (-) False G16400
XR_006250472.1 lncRNA upstream 2290 2393401 ~ 2420547 (-) False LOC122341602
TU24423 lncRNA upstream 24748 2415859 ~ 2423546 (-) False LOC122341602
TU24426 lncRNA upstream 24748 2415859 ~ 2423546 (-) True LOC122341602
TU24480 lncRNA upstream 123656 2514767 ~ 2515661 (-) True G16440
TU24497 lncRNA upstream 193783 2584894 ~ 2587860 (-) True G16453
XM_043235057.1 mRNA downstream 526 2371688 ~ 2374087 (-) True trir
XM_043235062.1 mRNA downstream 56566 2316014 ~ 2318047 (-) True LOC122341596
XM_043235061.1 mRNA downstream 56567 2316016 ~ 2318046 (-) False LOC122341596
XM_043235180.1 mRNA downstream 84251 2270598 ~ 2290362 (-) False LOC122341666
XM_043235179.1 mRNA downstream 84251 2270598 ~ 2290362 (-) True LOC122341666
XM_043235049.1 mRNA upstream 36834 2427945 ~ 2435535 (-) True rtbdn
XM_043235050.1 mRNA upstream 88017 2479128 ~ 2484230 (-) False LOC122341591
XM_043235054.1 mRNA upstream 88017 2479128 ~ 2484224 (-) False LOC122341591
XM_043235051.1 mRNA upstream 88017 2479128 ~ 2484224 (-) False LOC122341591
XM_043235053.1 mRNA upstream 88017 2479128 ~ 2484224 (-) False LOC122341591
TU24410 other downstream 12214 2303327 ~ 2362399 (-) True G16402
XR_006250468.1 other downstream 172044 2184445 ~ 2202569 (-) False pkn1b
TU24084 other downstream 374284 1788245 ~ 2000329 (-) False zc3h7ba
TU24448 other upstream 52957 2444068 ~ 2450203 (-) True G16421
XR_006250471.1 other upstream 88017 2479128 ~ 2484224 (-) True LOC122341591
XR_006250470.1 other upstream 240671 2631782 ~ 2640091 (-) False nup85
TU24533 other upstream 258731 2649842 ~ 2654030 (-) True G16478
TU24952 other upstream 924327 3315438 ~ 3319064 (-) False LOC122333478

Expression Profile