RNA id: XM_043235062.1


Basic Information

Item Value
RNA id XM_043235062.1
length 1029
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC122341596
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2316014 ~ 2318047 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGCGGGAGCGGCACACAGGAGCGCTTTACGCGGCGTCGATCGCTCGTTTGACCTTTTCTCTTCtcttatcatttatattttagttttttcgtAGCGTTTTCAGTCACTATAAACAGGAATGACGCTCGCGAACACGGTCGTAGAGTAAGCAGAGGTGAGCTGATCTTTTACTTAAGCACATTATCTGATTTTTTTACCTTGAAGCACGCGGAAAACCCCCCAAAGCCTGCTTTTAAAACCCAAAGCACGAGATCGTGCTCCTCACGCGAGAAGCCAAGCGCGCGCGGAATAATAAACACCGCGAGAGCGTGTTTTGGGGAGAGAACCCCGGTCAGGTGACGCTCGGTTTGTGCTCCATGAAAGAGATGCTGTCAGTTATTCATTCTCAGATCACTGCTGCTTTCAGATCAGCCGAGCAGCTCCGAAGAACATCTCAAACATCATGGAGTTCTCACTGGCTCACCCAGCTGTGAAAGCGTTCATGTGTGGCTCCCTGAGCGGGACGTGCTCCACGCTGCTCTTCCAGCCCCTGGACCTGGTGAAGACGCGTCTGCAGACCCTTCACGGCGTCCAGCCCGGGTCGGCTCGGGTCGGTATGGTCACGGTCTTTGTGAGCGTCCTGCGGACGGAGAAGCTCCTCGGCCTGTGGAGAGGTGTTTCTCCTTCGTTTGTGCGCTGTATTCCAGGAGTCGGCATCTACTTCAGCACGTATTTCACTCTGAAGCAGCGCTTTTTCGCTGATGGGGCCCCGGGGCCCTTGCAGGCTGTACTGCTGGGAGCTGGAGCCAGGTGTGTCGCAGGCGTCTGCATGCTCCCCGTCACCGTCATCAAAACACGCttcgaggtgtgtgtgtgtgtgtgtgtgtgaggtagtGAAGAGACTCttataatgttagaaaaaaatgactaatgcCGTTTTCAACGTTGAGTATTGAGCGACAAATCGGCGTATTAGAATCAGTTCTGAAGGATCTTTCAGAAATAGAGAGatcatttctctctgtctgtctctctctgtctgtctctc

Function

GO:

id name namespace
GO:0030218 erythrocyte differentiation biological_process
GO:0055085 transmembrane transport biological_process
GO:0020027 hemoglobin metabolic process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250484.1 lncRNA downstream 50383 2262671 ~ 2265631 (-) True LOC122341671
TU24391 lncRNA downstream 75569 2239298 ~ 2240445 (-) True G16393
XR_006250527.1 lncRNA downstream 175655 2136069 ~ 2140359 (-) True LOC122342126
TU24376 lncRNA downstream 190296 2125316 ~ 2125718 (-) True G16385
TU24108 lncRNA downstream 314443 2001274 ~ 2001571 (-) True G16217
TU24438 lncRNA upstream 64106 2382153 ~ 2383078 (-) True G16413
XR_006250472.1 lncRNA upstream 75354 2393401 ~ 2420547 (-) False LOC122341602
TU24423 lncRNA upstream 97812 2415859 ~ 2423546 (-) False LOC122341602
TU24426 lncRNA upstream 97812 2415859 ~ 2423546 (-) True LOC122341602
TU24480 lncRNA upstream 196720 2514767 ~ 2515661 (-) True G16440
XM_043235180.1 mRNA downstream 25652 2270598 ~ 2290362 (-) False LOC122341666
XM_043235179.1 mRNA downstream 25652 2270598 ~ 2290362 (-) True LOC122341666
XM_043235183.1 mRNA downstream 62566 2243892 ~ 2253448 (-) False mcoln1b
XM_043235182.1 mRNA downstream 62779 2243891 ~ 2253235 (-) False mcoln1b
XM_043235184.1 mRNA downstream 62780 2243892 ~ 2253234 (-) True mcoln1b
XM_043235057.1 mRNA upstream 53641 2371688 ~ 2374087 (-) True trir
XM_043235024.1 mRNA upstream 56566 2374613 ~ 2391111 (-) False hook2
XM_043235023.1 mRNA upstream 56566 2374613 ~ 2391111 (-) True hook2
XM_043235049.1 mRNA upstream 109898 2427945 ~ 2435535 (-) True rtbdn
XM_043235050.1 mRNA upstream 161081 2479128 ~ 2484230 (-) False LOC122341591
XR_006250468.1 other downstream 113445 2184445 ~ 2202569 (-) False pkn1b
TU24084 other downstream 315685 1788245 ~ 2000329 (-) False zc3h7ba
TU24082 other downstream 315874 1788245 ~ 2000140 (-) False zc3h7ba
TU24428 other upstream 15509 2333556 ~ 2423546 (-) False LOC122341602
TU24448 other upstream 126021 2444068 ~ 2450203 (-) True G16421
XR_006250471.1 other upstream 161081 2479128 ~ 2484224 (-) True LOC122341591
XR_006250470.1 other upstream 313735 2631782 ~ 2640091 (-) False nup85
TU24533 other upstream 331795 2649842 ~ 2654030 (-) True G16478

Expression Profile