RNA id: XM_043235426.1


Basic Information

Item Value
RNA id XM_043235426.1
length 4321
RNA type mRNA
GC content 0.46
exon number 6
gene id si:ch211-106h11.1
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2148296 ~ 2155028 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGGCTTGTCGTAAATCCCCAGACTTTAAATGTGCGACCTGGCGAGAAACGGGGGTTTCCTACGCAACTAACAttgttttcacacttttttttttacttggcgAGTGCATTCTGACGCTGTGCAGTGGCAcggtttatttataaagccgagtttaaaaaaaaaaaaacgaaacaaaacgcAACACTTCACTTTGATCGTAAGTTCAACTTCAGGTAAATTTAAGAAAGTGAAACGTAAAAGAAACcgacaaaaatacattaaagcaaTCAGAATGCAACGGTTTACTCGTAAAGTAAACTTCGTGAGTGCAACGTCTAGGAAATGTATTTGACGTAAACATATAGTTTCCATGCAAACGTCTCTAAATCATTTTCAAGCGCAAACACGCTTCATCATTCAAACTAAGTAGCGCCGTCTGCTGTTCAGCACTGAGAGGACAGTGGTCTTTCTCAAAGATCTGACCAACTTTGTCGTCATGGAAACCTCAAAGCAGCTTCTGGGGCCCCTCTGTGTCGAAGTTGGTGAGGCTGGACGCGTATTGTTGAGAAAACCAGCCTGCGCCGGACTCGAGTGCAAGAAAACCAAAGCATGAAGGTTGAGCTTTAGAGTTACAGTACATCGCAATGTTCACGTTGTCCGAGCTGTGGTCCGGCGGTGAGCGTCAGGGTAGTTATAAGTTGCTGAAGCCGTGGTGGGAGGTCTTCATGGACTACCTTCTGGTGCTCATGCTGATGGTGTCCATCCTTGCCGGGACGCTCCAGCTGTCACGGGACGGAGTCGTGTGCGTCCCAGTGCACTCTTCTTCCATCAACTACAGCTCTCCCATGGAGCCTGTGTCTGATTCAATTTTTAATAGCAACCCAGAGTCACCCAAGATTTCTGTGAAGGGGCGACGTACCAACCTTGACTTCCAGCAGTACATCTACATCAGCCAGGTTTGCTATCACGAGGCATTGCCCTGGTACTCACGGTTTTTGCCATATGTGACCCTGCTCCATACGTTAGTTCTCCTGGCCAGTGGTTGCTTCTGGTTCCACTTCCCGCTCACGTCTGCTCGCGTCGAGCACTTCCTATCACTTCTCGCCAAATGTTGCGAATCGCCCTGGACAACAAGGGCCCTCTCTCTTACAGCCAGACTGGACACACGCTTCTCTGAGACAGAACAAGTTGTGCAACCCAAAGTTCAGGTAACAACTTCGTACAAAACACGAAAGTCAAGTCTGGATTCGGGGACGGACAGCCCCCTATTGGCGGGGACTGATAGTGTGTCCACTACAACGCAACCATCTCCGTGTCCCTCGACGTTGTCCCATTGCTCAACGCATTCTGCTATGTCACTCATAGAGCCGGTTCTGCCTGTCCAAGTTGTCCCAGACACTTCCAGACAGGGAGCCACGTTAGACCGCAGCGACAGAGAGCAGGCCAGAGCTCTGTTCGAGAGAGTGCGCAGGTTTCGTGCTCACTGCGAGAGTTCAGATGTTATCTATAAGGTGTACACTGCTCAAACGGTGTTCAAGGTTCTGAAGTTTATTCTGATTGTTAGCTACACCACTCCTCTCCTGGGCTCAATCTCTTTTAGTCACATTTGCCAACCTCGCTCTTCTGCTCTGACCGGCTACAGTGTCTTCCAGTGCAGTCACTCACTGTCCTCTGTCCTACGCAAGCTAATGCAGGCCTACGTCTTGCTGCTCTTCCTGTTTGGTCTGCTGGCCATCTATGCCCTGTCCTGGATCTTCCACAAGTCTTTGAGGCAGTACTCTTTCCAGAGTCTACGTGAGAAAGGATCCATGCTAGATGTACCTGTACTTCATAATGACCTTGCCTTCCTCTTGCACATGGCCGACCAGTACGACCCTCTACTGGCCCAGCGCCTGTCTGTCTTCCTCTCACCGGTCAGTGAGACTCGACTTCTAGAAGAAAGTCTGGAGCGCCGTTGGGGAGCTGATCGCTTGCGATCAATGATCACGTTAGATCAGCAGGGACGCTCTCTGCTGCAGCTCGTGGCCCTTCCTCGTCTCCCAGGGGCCCTGTTCACCTTCAGCCAGCTAGAGGTGTTGAAGTTAGAACTTATCGGAGATGCCAAACTGACAGCACAAATATCTAACATGACCGCACTCAGAGAGATGCACCTTTACCACTGCACTGCATTAGTGGAGCCGGCTGCACTGCAGCACCTTCAAGAACATCTGGAGACTTTGCATCTAACCTTCACCCAAGCTGCAGAGATCCCAGTTTGGGTTTATTCCCTTCGAGGCCTGCAAGAGCTGCACCTCACTGGGAGGTTGAGCAATGAGGGTGGCATGGGGCGTGGATGGGGCCTTGGCAGCCTTCGACAACTGCGTCATCTCCGCATCTTGGTGCTGCGCGGCATGCTGCAGAAAGTTCCAGGGGAGCTGAGCGAATTGGCAGGGAGTCTGCTAAAACTGGAGATATATAACGAGGGCACCAGGTTAATGGTACTTACAGGACTGAGGCGTTTGACCGGACTGGCTGAAGTGCAACTGCAAGGATGCCAGTTGGAGAGGCTGCCATCAGCGCTGCTCGCGCTCACAGGCCTACGCAGTTTGGACATGCAACACAACAGTCTGCGTACTCTAGAAGAGCTGTTAGGATTGCAGCATTTGAGGCGTCTGTCCTGCCTACGACTGGCACATAACCGCGTTCTGGCTCTTCCGGTCAGCGTAGGAGTGCTGCGCTCACTGGAGCTCTTGGATTTGGCACACAATCAGATGCAAAACCTACCTTTGGCACTCTTTACACTGCATAAGCTGCGACGCCTGCTTTTGGCAGGAAACCTTTTGGAAGAGCTGCCAGCTGAAATCGGAGCCTTGAAGCTTCTTAGCGAACTAGACCTAAGTGGCAACAGGCTTGAACGTCTCCCCAAGGAACTGTTTGAAACGTGCATAGAGCTTCGCAACTTGAATGTTGCGAATAACTCTCTAGGGTCTTTGCCCACTGGTTTTGGCGGCCTGCCTCAGCTTTCGCGTCTGGATGTACGTGGAAACAGCCTAGAGCAACTGCCGGTCGAGCTGGGGTGTTGTTTTGGGCTTCGTGGAGGCGGTTTGCAAGTGGAAACCTGGCTGCTGCACACCCTACCTCGGCAGGTCAGGGATGTCCTACAGCAGCCCAGCTCTTGCCCGTCTTCTGAACCACCTTCACGACCTAATTCTGACTGCTTTCCTACCTTTTCAGCAGCTCAGTGGAGCTTCCACTCTGCACTGGAATCTCGGATATAAAACATCAGCTTCAGACTGAACTTGTGAAGAATATCTaactaatattactaaaactaGTCTGGAAAAGCCAGTTATTTCCCAAGACTTTAAATGTACCTCATAAGAATACACTCATAAGATAAATTAGAAACATGTTTCTATATTTAACCAGGTAACTGTCACTAGCCCAATTAAGACATTCTAAACCTCTCATTTTTGAAAAGCTAACTTTCATATTTGGTGACTAAACTTTTCGACTACTTTTTGTGCTTAAAGTTCAAAAACATAACAtccattataattttttttctaaaaaacttttaaacctaaaaacatACTGACAGAATCTCCATTTATGACAGAATGCAAACTATGCATGTTTGGTTGCTTTCTGCATGTCCTTTACAGTCCTAATATGGATCGCCGTATGTtgttttgaagtatattttttgtaaaattgattttatttaaaaaagttttacatgTAGTGCAGTGGATCTTATATTTTCATGAACTTTATCGGTAAAATTTTTTCCACCTCCACAATAATGAGACAAAATTTAGTCTTTGCTCCAAAATATTCTAGACGTACAATTAATTAGTAggtctttgtttaaaaagtagGACTGACAGTTATAATCCACCATTAATATGAAACGTGAGATAGTTTTGCACACTCTATGTGTAAGATGAGATGTATAATTACactaactaaataataaaaaccataacatagcatttttttggtttcataTACAGTACTGCTCAAACGTTTGGTCTAAAACCTCGAGATCTAAAGCTTATGCTGAAATGGTTGCATATACATGAATTACTTAACACAATTATCTAACTTTGTTTATTCTGTTACCTAATCAgtctattttattaatgtaataactAGACAAATAGAAAGAAAACTTTAGTTTACAATATTCGTTTACCACAACaaattaatctgaaataatATCTGAGGTCATAGTGTAGTTATGGTATTTTTCCGCcataatatttgatttgattattttccTTGATATGAAGCAACATGTCAGTCATGATATTACCCTGAGTTTTAAACCTAAATCAtaccaaaatgtaaataaacatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250527.1 lncRNA downstream 7937 2136069 ~ 2140359 (-) True LOC122342126
TU24376 lncRNA downstream 22578 2125316 ~ 2125718 (-) True G16385
TU24108 lncRNA downstream 146725 2001274 ~ 2001571 (-) True G16217
TU24102 lncRNA downstream 210538 1930044 ~ 1937758 (-) True G16212
TU24051 lncRNA downstream 274770 1870761 ~ 1873526 (-) True G16179
TU24391 lncRNA upstream 84271 2239298 ~ 2240445 (-) True G16393
XR_006250484.1 lncRNA upstream 107644 2262671 ~ 2265631 (-) True LOC122341671
TU24405 lncRNA upstream 141080 2296107 ~ 2354938 (-) False G16400
TU24406 lncRNA upstream 141080 2296107 ~ 2355467 (-) True G16400
TU24407 lncRNA upstream 144010 2299037 ~ 2358165 (-) True G16401
XM_043235429.1 mRNA downstream 151 2142234 ~ 2148145 (-) True ddx39ab
XM_043235231.1 mRNA downstream 22122 2118867 ~ 2126174 (-) True LOC122341690
XM_043235232.1 mRNA downstream 32876 2110031 ~ 2115420 (-) True txn2
XM_043235234.1 mRNA downstream 32901 2110031 ~ 2115395 (-) False txn2
XM_043234881.1 mRNA downstream 47013 2056846 ~ 2101283 (-) False LOC122341490
XM_043230546.1 mRNA upstream 10700 2165727 ~ 2176953 (-) True engl
XM_043234984.1 mRNA upstream 27499 2182526 ~ 2210233 (-) True pkn1b
XM_043234985.1 mRNA upstream 27499 2182526 ~ 2209656 (-) False pkn1b
XM_043234983.1 mRNA upstream 27499 2182526 ~ 2202569 (-) False pkn1b
XM_043234982.1 mRNA upstream 27499 2182526 ~ 2202565 (-) False pkn1b
TU24084 other downstream 147967 1788245 ~ 2000329 (-) False zc3h7ba
TU24079 other downstream 148156 1788245 ~ 2000140 (-) False zc3h7ba
TU24082 other downstream 148156 1788245 ~ 2000140 (-) False zc3h7ba
TU24085 other downstream 148156 1984597 ~ 2000140 (-) False zc3h7ba
TU24091 other downstream 298187 1847123 ~ 1850109 (-) False LOC122333107
XR_006250468.1 other upstream 29418 2184445 ~ 2202569 (-) False pkn1b
TU24410 other upstream 148300 2303327 ~ 2362399 (-) True G16402
TU24428 other upstream 178529 2333556 ~ 2423546 (-) False LOC122341602
TU24448 other upstream 289041 2444068 ~ 2450203 (-) True G16421
XR_006250471.1 other upstream 324101 2479128 ~ 2484224 (-) True LOC122341591

Expression Profile