RNA id: XM_043235429.1


Basic Information

Item Value
RNA id XM_043235429.1
length 1634
RNA type mRNA
GC content 0.55
exon number 10
gene id ddx39ab
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2142234 ~ 2148145 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGGCCGCGTACGCTCCGCCAATCAGAGCGCGCGTTCTTCAGGAGGCTGGATTTCCGCGCGGTAGTATAAACTGCGGCCTGGCGCGTGCGGTTTGAGGCAACAGCTGCGTTCGTGTGTCCGTATTCCTCGCGCACCGTCACCTGAAGAATGGCTGAGAACGATGTTGACAACGAGCTGCTGGATTACGAAGAGGACGACGAGCCTCAAGGAGCCCCGGAGAGCGCCGCTCCGGTGGGCAAGAAGGAGGTGAAGGGCTCGTACGTGTCCATCCACAGCTCGGGCTTCAGGGACTTCCTGCTCAAGCCGGAGCTGCTGAGGGCCATCGTGGACTGCGGCTTCGAGCATCCGTCTGAAGtgcagcacgAGTGCATCCCGCAGGCCATTCTCGGCATGGATATCCTGTGCCAGGCCAAGTCCGGTATGGGAAAGACGGCCGTGTTTGTGCTCGCCACCCTGCAGCAGATCGAGCCGGTGGACGGACAGGTGTCGGTGCTGGTCATGTGTCACACGCGCGAGCTGGCGTTTCAGATCAGCAAGGAGTACGAGCGCTTCTCCAAGTACATGCCCACGGTGAAGGTGGCCGTGTTCTTCGGCGGCATGTCCATAAAGAAGGACGAGGATGTCCTGAAGAAGAGCTGCCCTCACATCGTGGTGGGAACGCCGGGCCGAATCCTCGCCCTGGTCCGGAACAAAACCCTCAACCTGAAGAACGTCAAGCACTTCGTTCTGGACGAGTGCGACAAGATGCTGGAGCAGCTGGATATGAGACGTGACGTTCAGGACATCTTCAGACTGACCCCTCATGAGAAGCAGTGCATGATGTTCAGCGCCACCCTCAGCAAAGAGATTCGGCCCGTCTGCCGCAAGTTCATGCAGGACCCGATGGAGGTGTTTGTGGACGACGAGACGAAGCTGACTCTTCACGGTCTGCAGCAGTATTACTGTAAACTGAAGGACAGCGAGAAGAACCGCAAGCTCTTCGACCTGCTCGACGTGCTGGAGTTCAACCAGGTGGTGATATTTGTGAAGTCTGTTCAGCGTTGTGTGGCGCTTTCACAGTTACTGGTGGAGCAGAACTTCCCCGCCATCGCCATCCACAGAGGAATGGCACAGGAAGAGAGGTTGTCTCGGTATCAGCAGTTTAAAGACTTTCAGAGGAGGATCCTAGTGGCCACAAACCTCTTTGGTCGAGGAATGGATATCGAGAGGGTCAACATCGTCTTCAACTACGATATGCCAGAGGACTCCGACACCTATCTCCACAGGGTGGCTCGTGCGGGTCGCTTTGGCACCAAGGGTTTGGCCGTCACGTTTGTGTCAGATGAGACCGACGCAAAGATCCTGAACGACGTGCAGGACCGATTCGAGGTCAATGTGGCAGAGTTACCAGAGGAGATTGACATTTCCACTTACATTGAACAGTCCAGATGAAGGTGTTGATGTTTCCAGAGTCGCAGCTGTTGGATCACGGCAGGGCACAGAACCTCCGTTTTTAAAGCCTCCTTTTTACCTCAAACCCACAATTGTTTTTACTGCTTCACTCGGAGGACCGGGCGAGTtgtctgttttgatttttgtcCTAAAATCATGTTCTGTTTTgggttttaatgaaattaaaactttttatatacTA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12812 DDX39B, UAP56, SUB2; ATP-dependent RNA helicase UAP56/SUB2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250527.1 lncRNA downstream 1875 2136069 ~ 2140359 (-) True LOC122342126
TU24376 lncRNA downstream 16516 2125316 ~ 2125718 (-) True G16385
TU24108 lncRNA downstream 140663 2001274 ~ 2001571 (-) True G16217
TU24102 lncRNA downstream 204476 1930044 ~ 1937758 (-) True G16212
TU24051 lncRNA downstream 268708 1870761 ~ 1873526 (-) True G16179
TU24391 lncRNA upstream 91153 2239298 ~ 2240445 (-) True G16393
XR_006250484.1 lncRNA upstream 114526 2262671 ~ 2265631 (-) True LOC122341671
TU24405 lncRNA upstream 147962 2296107 ~ 2354938 (-) False G16400
TU24406 lncRNA upstream 147962 2296107 ~ 2355467 (-) True G16400
TU24407 lncRNA upstream 150892 2299037 ~ 2358165 (-) True G16401
XM_043235231.1 mRNA downstream 16060 2118867 ~ 2126174 (-) True LOC122341690
XM_043235232.1 mRNA downstream 26814 2110031 ~ 2115420 (-) True txn2
XM_043235234.1 mRNA downstream 26839 2110031 ~ 2115395 (-) False txn2
XM_043234882.1 mRNA downstream 40229 2056846 ~ 2102005 (-) False LOC122341490
XM_043234880.1 mRNA downstream 40229 2056846 ~ 2102005 (-) True LOC122341490
XM_043235428.1 mRNA upstream 151 2148296 ~ 2155028 (-) False si:ch211-106h11.1
XM_043235427.1 mRNA upstream 151 2148296 ~ 2155028 (-) False si:ch211-106h11.1
XM_043235426.1 mRNA upstream 151 2148296 ~ 2155027 (-) True si:ch211-106h11.1
XM_043230546.1 mRNA upstream 17582 2165727 ~ 2176953 (-) True engl
XM_043234984.1 mRNA upstream 34381 2182526 ~ 2210233 (-) True pkn1b
TU24084 other downstream 141905 1788245 ~ 2000329 (-) False zc3h7ba
TU24079 other downstream 142094 1788245 ~ 2000140 (-) False zc3h7ba
TU24082 other downstream 142094 1788245 ~ 2000140 (-) False zc3h7ba
TU24085 other downstream 142094 1984597 ~ 2000140 (-) False zc3h7ba
TU24091 other downstream 292125 1847123 ~ 1850109 (-) False LOC122333107
XR_006250468.1 other upstream 36300 2184445 ~ 2202569 (-) False pkn1b
TU24410 other upstream 155182 2303327 ~ 2362399 (-) True G16402
TU24428 other upstream 185411 2333556 ~ 2423546 (-) False LOC122341602
TU24448 other upstream 295923 2444068 ~ 2450203 (-) True G16421
XR_006250471.1 other upstream 330983 2479128 ~ 2484224 (-) True LOC122341591

Expression Profile