ddx39ab (ddx39ab,ddx39,ddx39b,LOC107708265,LOC107691101,LOC107563747)


Basic Information

Item Value
gene id ddx39ab
gene name ddx39ab,ddx39,ddx39b,LOC107708265,LOC107691101,LOC107563747
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2142234 ~ 2148145 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235429.1
ACGGCCGCGTACGCTCCGCCAATCAGAGCGCGCGTTCTTCAGGAGGCTGGATTTCCGCGCGGTAGTATAAACTGCGGCCTGGCGCGTGCGGTTTGAGGCAACAGCTGCGTTCGTGTGTCCGTATTCCTCGCGCACCGTCACCTGAAGAATGGCTGAGAACGATGTTGACAACGAGCTGCTGGATTACGAAGAGGACGACGAGCCTCAAGGAGCCCCGGAGAGCGCCGCTCCGGTGGGCAAGAAGGAGGTGAAGGGCTCGTACGTGTCCATCCACAGCTCGGGCTTCAGGGACTTCCTGCTCAAGCCGGAGCTGCTGAGGGCCATCGTGGACTGCGGCTTCGAGCATCCGTCTGAAGtgcagcacgAGTGCATCCCGCAGGCCATTCTCGGCATGGATATCCTGTGCCAGGCCAAGTCCGGTATGGGAAAGACGGCCGTGTTTGTGCTCGCCACCCTGCAGCAGATCGAGCCGGTGGACGGACAGGTGTCGGTGCTGGTCATGTGTCACACGCGCGAGCTGGCGTTTCAGATCAGCAAGGAGTACGAGCGCTTCTCCAAGTACATGCCCACGGTGAAGGTGGCCGTGTTCTTCGGCGGCATGTCCATAAAGAAGGACGAGGATGTCCTGAAGAAGAGCTGCCCTCACATCGTGGTGGGAACGCCGGGCCGAATCCTCGCCCTGGTCCGGAACAAAACCCTCAACCTGAAGAACGTCAAGCACTTCGTTCTGGACGAGTGCGACAAGATGCTGGAGCAGCTGGATATGAGACGTGACGTTCAGGACATCTTCAGACTGACCCCTCATGAGAAGCAGTGCATGATGTTCAGCGCCACCCTCAGCAAAGAGATTCGGCCCGTCTGCCGCAAGTTCATGCAGGACCCGATGGAGGTGTTTGTGGACGACGAGACGAAGCTGACTCTTCACGGTCTGCAGCAGTATTACTGTAAACTGAAGGACAGCGAGAAGAACCGCAAGCTCTTCGACCTGCTCGACGTGCTGGAGTTCAACCAGGTGGTGATATTTGTGAAGTCTGTTCAGCGTTGTGTGGCGCTTTCACAGTTACTGGTGGAGCAGAACTTCCCCGCCATCGCCATCCACAGAGGAATGGCACAGGAAGAGAGGTTGTCTCGGTATCAGCAGTTTAAAGACTTTCAGAGGAGGATCCTAGTGGCCACAAACCTCTTTGGTCGAGGAATGGATATCGAGAGGGTCAACATCGTCTTCAACTACGATATGCCAGAGGACTCCGACACCTATCTCCACAGGGTGGCTCGTGCGGGTCGCTTTGGCACCAAGGGTTTGGCCGTCACGTTTGTGTCAGATGAGACCGACGCAAAGATCCTGAACGACGTGCAGGACCGATTCGAGGTCAATGTGGCAGAGTTACCAGAGGAGATTGACATTTCCACTTACATTGAACAGTCCAGATGAAGGTGTTGATGTTTCCAGAGTCGCAGCTGTTGGATCACGGCAGGGCACAGAACCTCCGTTTTTAAAGCCTCCTTTTTACCTCAAACCCACAATTGTTTTTACTGCTTCACTCGGAGGACCGGGCGAGTtgtctgttttgatttttgtcCTAAAATCATGTTCTGTTTTgggttttaatgaaattaaaactttttatatacTA

Function

symbol description
ddx39b Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in mRNA export from nucleus and mRNA splicing, via spliceosome. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human DDX39B (DExD-box helicase 39B).
ddx39ab Enables RNA binding activity. Involved in mRNA splicing, via spliceosome. Is expressed in several structures, including eye; heart tube; immature eye; liver; and trunk musculature. Orthologous to human DDX39A (DExD-box helicase 39A).
ddx39 ATP-dependent RNA helicase DDX39

NR:

description
PREDICTED: ATP-dependent RNA helicase DDX39A

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12812 DDX39B, UAP56, SUB2; ATP-dependent RNA helicase UAP56/SUB2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235429.1 True 1634 mRNA 0.55 10 2142234 2148145

Neighbor

gene id symbol gene type direction distance location
LOC122341690 NA coding downstream 16060 2118867 ~ 2126174 (-)
txn2 txn2,LOC107745512 coding downstream 26814 2110031 ~ 2115420 (-)
LOC122341490 myh9,LOC107745511,LOC107751969,LOC107672897,LOC107572814,LOC100380669,LOC106601336 coding downstream 40229 2056846 ~ 2102005 (-)
slc25a38a slc25a38a,LOC107745513,LOC107672904,LOC107751976,LOC107572806,LOC107563742,LOC108439114 coding downstream 86211 2050171 ~ 2056023 (-)
LOC122329915 NA coding downstream 99812 2010542 ~ 2042422 (-)
si:ch211-106h11.1 LOC107755611,LOC107672936,LOC107563749 coding upstream 151 2148296 ~ 2155028 (-)
engl LOC107755613,LOC107563770,LOC107575003 coding upstream 17582 2165727 ~ 2176953 (-)
wu:fb95e10 LOC107672920,LOC107563751,LOC107755615,LOC107696329 coding upstream 64021 2212166 ~ 2238246 (-)
mcoln1b mcoln1b,LOC107672921,LOC107755617 coding upstream 95746 2243891 ~ 2253448 (-)
LOC122341666 NA coding upstream 122453 2270598 ~ 2290362 (-)
LOC122342126 NA non-coding downstream 1875 2136069 ~ 2140359 (-)
G16385 NA non-coding downstream 16516 2125316 ~ 2125718 (-)
G16217 NA non-coding downstream 140663 2001274 ~ 2001571 (-)
G16212 NA non-coding downstream 204476 1930044 ~ 1937758 (-)
G16179 NA non-coding downstream 268708 1870761 ~ 1873526 (-)
G16393 NA non-coding upstream 91153 2239298 ~ 2240445 (-)
LOC122341671 NA non-coding upstream 114526 2262671 ~ 2265631 (-)
G16400 NA non-coding upstream 147962 2296107 ~ 2355467 (-)
G16401 LOC107696333,LOC107741349,LOC107749601,LOC107575050,LOC107575170 non-coding upstream 150892 2299037 ~ 2358165 (-)
LOC122341603 NA non-coding upstream 154044 2302189 ~ 2320322 (-)
zc3h7ba LOC107563727,LOC107672930,LOC107722838,LOC107572808 other downstream 141760 1788245 ~ 2000474 (-)
LOC122333107 NA other downstream 291954 1846692 ~ 1850280 (-)
G16172 NA other downstream 489868 1620964 ~ 1652366 (-)
LOC122330455 kdelr3,LOC107731665,LOC107563718,LOC107679478,LOC107674488 other downstream 958646 1164316 ~ 1183588 (-)
G16054 mei1,LOC107674470,LOC107731661 other downstream 989474 1147589 ~ 1152760 (-)
pkn1b LOC107672927,LOC107755614,LOC107742419 other upstream 34381 2182526 ~ 2210233 (-)
G16402 ubn2b,LOC107567211,LOC107677340,LOC107741349,LOC107696333 other upstream 155182 2303327 ~ 2362399 (-)
trir c12h19orf43,LOC107677344,LOC107575051,LOC107567214 other upstream 166414 2314559 ~ 2374087 (-)
LOC122341602 junbb,LOC107741351,LOC107567221,LOC107568144,LOC107696348,LOC107726104 other upstream 185411 2333556 ~ 2423546 (-)
G16421 LOC107572279,LOC107572278,LOC107668191,LOC107569684,LOC107574181,LOC107574114 other upstream 295923 2444068 ~ 2450203 (-)

Expression


Co-expression Network