RNA id: XM_043235232.1


Basic Information

Item Value
RNA id XM_043235232.1
length 1053
RNA type mRNA
GC content 0.56
exon number 4
gene id txn2
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2110031 ~ 2115420 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCGCGCCGCTGTGACGCAGCAGCTGCGCGCGAGCGGAAGTACGTCAGGGGTCCTTGTGACCAGAGGTCTCCGGAGCTCACGATGGCGTTCAGGCTGCTGGCTCGGAGGGTTTGTGGGCTTTCCGTCAGGGATGCGAGGCGTCCGCCGGCCGCCGTCTGGTGCTCCTCGTCCTTCTCCTCGGCTCTGAGCCCGTCTCCGGCGCTGCTCCCGCTCCCGCGCCTCCTCCCGCTGTCCTCCCGCAGGAGCGTGTCCTTCAACGTGCAGGACCACGACGACTTCACCGACCGAGTCATCAACAGCCAGCTGCCCGTCCTCGTCGACTTCCACGCGCAGTGGTGTGGTCCGTGTAAGATCCTCGGCCCGCGGCTGGAGAAGGCCATCGCCAAGCAGAAGGGCCGCGTGACCATGGCCAAAGTCGACATCGACGAACACACGGACCTCGCCATCGAGTACGGGGTGTCGGCGGTTCCCACGGTGATCGCCATGCGCGGCGGCGATGTCATCGACCAGTTCGTGGGCATCAAAGACGAAGACCAGCTGGATTCTTTTGTGCAGAAGCTGATTGGACAGTGAAGCTGTCAGTCAAACCCGCCTAGCCCCGCCCACCTCCCCACGGAAACTCCATTACGTTTCATTACAGACTCGGACAAACTGCACCATCTCTCCTGCTTTccttaactgtgtgtgtgtgtgtgtgtgttttagagggTCTGTGGCAGTGTTTTACCGCGGTTAAAGTGTAGTAAAGTGTTCTGGGACGTCCCGTAGCTGCTGAGGAGAACTGAAGGATGGACGCTTCCTCACGCGCCGCTCTTTTACACCTGAATGCCTGCTAATGTGAAAGTGTGTGCGGATCACGAGCCTTTGTTTCCGTTccctttgctttcttttctttttttttccgaTCTGACTGTGAATTTTTTGCGCAGGATGCATGGGATCGATGACGGCTTTGTTTAGACTttaactcatatatatatatatatatatatatggtaatatAACCAACTAGTCAggtgaaattatgaataaagcAACTGTACTGTATTTA

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG:

id description
K03671 trxA; thioredoxin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24108 lncRNA downstream 108460 2001274 ~ 2001571 (-) True G16217
TU24102 lncRNA downstream 172273 1930044 ~ 1937758 (-) True G16212
TU24051 lncRNA downstream 236505 1870761 ~ 1873526 (-) True G16179
XR_006248089.1 lncRNA downstream 288673 1820617 ~ 1821358 (-) True LOC122330783
XR_006248082.1 lncRNA downstream 312276 1796712 ~ 1797755 (-) True LOC122330758
TU24376 lncRNA upstream 9896 2125316 ~ 2125718 (-) True G16385
XR_006250527.1 lncRNA upstream 20649 2136069 ~ 2140359 (-) True LOC122342126
TU24391 lncRNA upstream 123878 2239298 ~ 2240445 (-) True G16393
XR_006250484.1 lncRNA upstream 147251 2262671 ~ 2265631 (-) True LOC122341671
TU24405 lncRNA upstream 180687 2296107 ~ 2354938 (-) False G16400
XM_043234882.1 mRNA downstream 8026 2056846 ~ 2102005 (-) False LOC122341490
XM_043234880.1 mRNA downstream 8026 2056846 ~ 2102005 (-) True LOC122341490
XM_043234881.1 mRNA downstream 8748 2056846 ~ 2101283 (-) False LOC122341490
XM_043234884.1 mRNA downstream 54008 2050171 ~ 2056023 (-) False slc25a38a
XM_043234885.1 mRNA downstream 54009 2050171 ~ 2056022 (-) True slc25a38a
XM_043235231.1 mRNA upstream 3447 2118867 ~ 2126174 (-) True LOC122341690
XM_043235429.1 mRNA upstream 26814 2142234 ~ 2148145 (-) True ddx39ab
XM_043235428.1 mRNA upstream 32876 2148296 ~ 2155028 (-) False si:ch211-106h11.1
XM_043235427.1 mRNA upstream 32876 2148296 ~ 2155028 (-) False si:ch211-106h11.1
XM_043235426.1 mRNA upstream 32876 2148296 ~ 2155027 (-) True si:ch211-106h11.1
TU24084 other downstream 109702 1788245 ~ 2000329 (-) False zc3h7ba
TU24079 other downstream 109891 1788245 ~ 2000140 (-) False zc3h7ba
TU24082 other downstream 109891 1788245 ~ 2000140 (-) False zc3h7ba
TU24085 other downstream 109891 1984597 ~ 2000140 (-) False zc3h7ba
TU24091 other downstream 259922 1847123 ~ 1850109 (-) False LOC122333107
XR_006250468.1 other upstream 69025 2184445 ~ 2202569 (-) False pkn1b
TU24410 other upstream 187907 2303327 ~ 2362399 (-) True G16402
TU24428 other upstream 218136 2333556 ~ 2423546 (-) False LOC122341602
TU24448 other upstream 328648 2444068 ~ 2450203 (-) True G16421
XR_006250471.1 other upstream 363708 2479128 ~ 2484224 (-) True LOC122341591

Expression Profile