vopp1 (vopp1,LOC107728740,LOC107757191,LOC107693470)


Basic Information

Item Value
gene id vopp1
gene name vopp1,LOC107728740,LOC107757191,LOC107693470
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 6486531 ~ 6506257 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225821.1
GTGTTCTAGTGAAGACCTAGTTCTGGTTTCGGGAGCCTCGAGCTGTTCGTGCGCGCTAGTATCGCgtgctgctgtttttctccagTGGAAATCATTTGATTGTTGCGCGAGCGCggaccgacacacacacacacacgcacgcacgcacgcacgcacgcacgcacacacactccgTCCAGCTCCGGCATGCTCGGGCTTCTGCTGTGAAGCTTTGCTGCTATGAAAGCTCGGTGCTGACAGCTTCGAGTCGGTGCAGGATGCCGGAGCGAGGGACGCGGCGTGGAGCGGTGCTGCTGACGCTGTGCGCGCTGCTCGAGTGCATAGAAGCAAAGAAGTACTGCTGGTATTTTGAAGGAGGATACCCCATCTATTTCATATGCCGCTCGTATGAAGACTGCTGTGGGACGCGCTGCTGCGTCCGAGCGCTCTCCATCCAGAGACTCTGGTACTTCTGgctgctgctgatgatgggCGTGCTCTTCTGCTGCGGAGCGGGCTTCTTCATTCGCCGGCGCATGTATCCGTCATCGCTCAGCGAAGAGCCCGCCTTCAACGTGTCCTTCACCAGACAACCGGTCAGCTCTCCAGTCTCCCAGCAGCCGGGCATGCAAGGCTACGGTGACCCCTGCGTCGCCATGACGACGACCCTGACCCCCGCCTACCCGGGTCAGCCGGCCCCGGCCCACATGCTGAGCTCGTACCCCCCTCCGCCCTCCTACTGCAACCATCCACCGCCTTCCTACGAGCAGGTGTTCAGGAACGCCGAGAAGAAGAGCCACAGCGAGTCCTCGCAATGAGACGCTCGGCCC

Function

symbol description
vopp1 Predicted to be located in cytoplasmic vesicle membrane. Predicted to be integral component of membrane. Predicted to be integral component of organelle membrane. Orthologous to human VOPP1 (VOPP1 WW domain binding protein).

NR:

description
PREDICTED: vesicular, overexpressed in cancer, prosurvival protein 1

GO:

id name namespace
GO:0030659 cytoplasmic vesicle membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225821.1 True 809 mRNA 0.61 5 6486531 6506257

Neighbor

gene id symbol gene type direction distance location
LOC122329460 LOC107570661,LOC107705132 coding downstream 256136 6170195 ~ 6230395 (-)
LOC122330271 pard3,LOC107690576,LOC107557790,LOC107749111 coding downstream 389101 6093017 ~ 6097430 (-)
LOC122329399 fbxl7,LOC107653805,LOC107714010,LOC107566917,LOC107718179,LOC107722558,LOC107689422,LOC107688519 coding downstream 425993 6051285 ~ 6060538 (-)
rmdn1 rmdn1,LOC107678485,LOC107729932,LOC107668150,LOC107756855,LOC107735575 coding downstream 472780 6010738 ~ 6013751 (-)
pigm pigm,LOC107573292,LOC107572623 coding downstream 490868 5991972 ~ 5995663 (-)
napga napg,napga,LOC107655688,LOC107734322,LOC108431250,LOC108271818,LOC107653787 coding upstream 559002 7065259 ~ 7071527 (-)
cdk13 LOC107653808,LOC107713640,LOC107655698,LOC107734321 coding upstream 566195 7072452 ~ 7088200 (-)
itgb1a itgb1a,LOC107565694,LOC107566918,LOC107653806,LOC107734314 coding upstream 635718 7141975 ~ 7168191 (-)
nrp1a nrp1a,nrp1,LOC107565689 coding upstream 665261 7171518 ~ 7232261 (-)
cul2 cul2 coding upstream 1333673 7839930 ~ 7855734 (-)
G161247 NA non-coding downstream 30215 6455810 ~ 6456316 (-)
G161229 NA non-coding downstream 39949 6403500 ~ 6446582 (-)
G161227 NA non-coding downstream 80796 6405096 ~ 6405735 (-)
G161228 reck,LOC107757182 non-coding downstream 81594 6401424 ~ 6404937 (-)
G161184 NA non-coding downstream 174688 6309789 ~ 6311843 (-)
G161270 NA non-coding upstream 247223 6753480 ~ 6757521 (-)
LOC122329480 piezo2,LOC107566915,LOC107734312,LOC107655677 non-coding upstream 545160 7051417 ~ 7057275 (-)
G161355 NA non-coding upstream 553398 7059655 ~ 7060512 (-)
G161338 NA non-coding upstream 592822 7099079 ~ 7099411 (-)
G161356 NA non-coding upstream 594995 7101252 ~ 7102083 (-)
G161224 lancl2,LOC107561957,LOC107693471,LOC107566172,LOC107655705 other downstream 16430 6396171 ~ 6470101 (-)
LOC122330195 pard3,LOC107713921,LOC107734328,LOC107692754,LOC108431315 other downstream 365614 6100744 ~ 6120917 (-)
LOC122329398 fbxl7,LOC107718179,LOC107689422,LOC107589836,LOC107688519,LOC107722558,LOC107585539,LOC107653805,LOC107714010,LOC107566917,LOC107734313,LOC107565690,LOC107655697 other downstream 399715 6063599 ~ 6086816 (-)
G161139 NA other downstream 489841 5996101 ~ 5996690 (-)
rheb rheb,LOC106579659,LOC107653878,LOC106590380 other downstream 1063463 5372155 ~ 5423068 (-)
G161327 LOC107713878 other upstream 438929 6945186 ~ 7005408 (-)
ralaa ralaa,rala,LOC107565693,LOC103042957,LOC108268083,LOC101477841,LOC107655676 other upstream 584257 7090514 ~ 7096839 (-)
pard3aa pard3,LOC107713921,LOC107734328,LOC108431315,LOC107692754 other upstream 883838 7390095 ~ 7838521 (-)
LOC122330139 lyrm4,LOC107692762,LOC107570464,LOC107653796,LOC107713738 other upstream 1532490 8038747 ~ 8082930 (-)
G161893 LOC107563058 other upstream 3425038 9931295 ~ 9932802 (-)

Expression


Co-expression Network