Gene
RNA
| Item | Value |
|---|---|
| gene id | G23559 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000003 |
| NCBI id | null |
| chromosome length | 2831192 |
| location | 1504531 ~ 1504957 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| unnamed protein product, partial |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU26582 | True | 427 | lncRNA | 0.31 | 1 | 1504531 | 1504957 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000003_01424386_01424816 | NA | coding | downstream | 79616 | 1424350 ~ 1424915 (-) |
| CI01000003_01368353_01374263 | YME1L1B, YME1L1 | coding | downstream | 130268 | 1368353 ~ 1374263 (-) |
| CI01000003_01348419_01352984 | RAB18B, RAB18, RAB18A | coding | downstream | 151547 | 1346599 ~ 1352984 (-) |
| CI01000003_01200556_01220189 | NA | coding | downstream | 284342 | 1200052 ~ 1220189 (-) |
| CI01000003_01194276_01196374 | BAMBIB | coding | downstream | 307512 | 1193316 ~ 1197019 (-) |
| CI01000003_01601113_01624224 | NA | coding | upstream | 96008 | 1600965 ~ 1624224 (-) |
| CI01000003_01632757_01671893 | EGFRA | coding | upstream | 125650 | 1630607 ~ 1671893 (-) |
| CI01000003_01807697_01809455 | C1QL3, C1QL3B | coding | upstream | 302173 | 1807130 ~ 1809455 (-) |
| CI01000003_01836259_01849326 | GPT2L, ALAT2 | coding | upstream | 331243 | 1836200 ~ 1849326 (-) |
| CI01000003_01856167_01857447 | FUZ | coding | upstream | 349884 | 1854126 ~ 1857447 (-) |
| G23553 | NA | non-coding | downstream | 5921 | 1496915 ~ 1498610 (-) |
| G23542 | NA | non-coding | downstream | 18778 | 1485538 ~ 1485753 (-) |
| G23520 | NA | non-coding | downstream | 47685 | 1456634 ~ 1456846 (-) |
| G23479 | NA | non-coding | downstream | 51803 | 1450900 ~ 1452728 (-) |
| G23482 | NA | non-coding | downstream | 55140 | 1445231 ~ 1449391 (-) |
| G23566 | NA | non-coding | upstream | 3499 | 1508456 ~ 1508759 (-) |
| G23576 | NA | non-coding | upstream | 37148 | 1542105 ~ 1542477 (-) |
| G23577 | NA | non-coding | upstream | 38378 | 1543335 ~ 1543558 (-) |
| G23582 | NA | non-coding | upstream | 47702 | 1552659 ~ 1569896 (-) |
| G23639 | NA | non-coding | upstream | 284480 | 1789437 ~ 1789930 (-) |
| G22716 | NA | other | downstream | 1434787 | 50512 ~ 69744 (-) |
